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The map label for this gene is yybE [H]

Identifier: 154686854

GI number: 154686854

Start: 2542160

End: 2543044

Strand: Reverse

Name: yybE [H]

Synonym: RBAM_024240

Alternate gene names: 154686854

Gene position: 2543044-2542160 (Counterclockwise)

Preceding gene: 154686856

Following gene: 154686853

Centisome position: 64.9

GC content: 48.14

Gene sequence:

>885_bases
ATGGAGCTTCATCAAATTGACAACTTCATTGCGGCGGCAGCTCATCAGCATTTCACAAATGCGGCAAAAGAAAGAATGAT
TTCTCAGCCGGCATTAAGCCGATCGATTATCAGGCTCGAAGAAGAATTAGGCGCGCCGTTATTTTTCAGAGATACAAAAG
CCGTCCGGCTGACAAGGCACGGAGAGCAGTTCTTAATAAAAGCAAAACAAGCGAGACGAGCTTTAAATGAAGGCGTTGAA
CAAGTGAAAAAGAATATGAGCCTGGAGCACGGCGAAATATCTGTATCTTTCCTTCATACGCTCGGGCTGCGCTTAATGCC
TCAGCTGATTGCCGAATTTAAAAAGCTATACCCAAACGTGACCTTCCGGCTTTATCAAGGCGCAAATGAAACGCTTCGCA
AAATGGTGGAAACGGGAGATGCGGATATCTGTCTCAGCTCCCCGCCGCTTCCCAGCGAGCTTTTACAATGGACAGTGCTG
GAGAAAGAGCCTCTTTATGCGGTGCTACCTGAGAACCACCCGCTTGCAGGAAATAAAAGCATTCAAATGAAAGAGATGCA
GGACGAGGATTTTGTGGGTTTTAAACCGGGATACGGGCTGAGGTATATGTTTGATCTGATGTGCCGGGATTTGAATATAC
ACCCGCATCTCGCATTTGAAGGAGAGGAAGTGTCAACCATATTAGGGCTGACCGCCGCGGGTCTGGGGGCTGCAGTGCTG
CCGAAAACCGCGGAGCATTCATACTTTCCGGTCGTTTTTCTTCCGGTTGCAGATTACCAATGCGAACGCACCATAGCGTT
AGCCCAGCTGAAAAACCATGCTCTCTCTCCCGCTGCTGAGCGTTTTAAACAGTTTGCACTTGAGTATTACAAAGCACGCA
ACTGA

Upstream 100 bases:

>100_bases
GGTTATATATGTATCGTACGCTTTTCATTTCAATGTGTCTAATTTATAATAACTATAGAATTAATGCGTGTAGGTTATGA
AGAAAGGGGAGAAGGAGAAA

Downstream 100 bases:

>100_bases
GCGGTCATTTTATTAAAATCGAAGTTGAAAATAAAGCAGAAAGAAATACAGAAAACGGAGGAAAAGCATGGCGAAAAAAA
CAGTGAAAACAAATGCTGTC

Product: putative HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MELHQIDNFIAAAAHQHFTNAAKERMISQPALSRSIIRLEEELGAPLFFRDTKAVRLTRHGEQFLIKAKQARRALNEGVE
QVKKNMSLEHGEISVSFLHTLGLRLMPQLIAEFKKLYPNVTFRLYQGANETLRKMVETGDADICLSSPPLPSELLQWTVL
EKEPLYAVLPENHPLAGNKSIQMKEMQDEDFVGFKPGYGLRYMFDLMCRDLNIHPHLAFEGEEVSTILGLTAAGLGAAVL
PKTAEHSYFPVVFLPVADYQCERTIALAQLKNHALSPAAERFKQFALEYYKARN

Sequences:

>Translated_294_residues
MELHQIDNFIAAAAHQHFTNAAKERMISQPALSRSIIRLEEELGAPLFFRDTKAVRLTRHGEQFLIKAKQARRALNEGVE
QVKKNMSLEHGEISVSFLHTLGLRLMPQLIAEFKKLYPNVTFRLYQGANETLRKMVETGDADICLSSPPLPSELLQWTVL
EKEPLYAVLPENHPLAGNKSIQMKEMQDEDFVGFKPGYGLRYMFDLMCRDLNIHPHLAFEGEEVSTILGLTAAGLGAAVL
PKTAEHSYFPVVFLPVADYQCERTIALAQLKNHALSPAAERFKQFALEYYKARN
>Mature_294_residues
MELHQIDNFIAAAAHQHFTNAAKERMISQPALSRSIIRLEEELGAPLFFRDTKAVRLTRHGEQFLIKAKQARRALNEGVE
QVKKNMSLEHGEISVSFLHTLGLRLMPQLIAEFKKLYPNVTFRLYQGANETLRKMVETGDADICLSSPPLPSELLQWTVL
EKEPLYAVLPENHPLAGNKSIQMKEMQDEDFVGFKPGYGLRYMFDLMCRDLNIHPHLAFEGEEVSTILGLTAAGLGAAVL
PKTAEHSYFPVVFLPVADYQCERTIALAQLKNHALSPAAERFKQFALEYYKARN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=29.1666666666667, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787879, Length=288, Percent_Identity=30.9027777777778, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=29.6819787985866, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1790399, Length=301, Percent_Identity=28.9036544850498, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788887, Length=263, Percent_Identity=29.277566539924, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788748, Length=282, Percent_Identity=27.3049645390071, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787530, Length=298, Percent_Identity=25.1677852348993, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790208, Length=258, Percent_Identity=27.1317829457364, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI2367136, Length=260, Percent_Identity=24.2307692307692, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=30.8988764044944, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=23.7903225806452, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788296, Length=251, Percent_Identity=25.0996015936255, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=243, Percent_Identity=24.2798353909465, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=187, Percent_Identity=28.3422459893048, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=280, Percent_Identity=23.2142857142857, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33264; Mature: 33264

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELHQIDNFIAAAAHQHFTNAAKERMISQPALSRSIIRLEEELGAPLFFRDTKAVRLTRH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCEEEEECC
GEQFLIKAKQARRALNEGVEQVKKNMSLEHGEISVSFLHTLGLRLMPQLIAEFKKLYPNV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TFRLYQGANETLRKMVETGDADICLSSPPLPSELLQWTVLEKEPLYAVLPENHPLAGNKS
EEEEECCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCC
IQMKEMQDEDFVGFKPGYGLRYMFDLMCRDLNIHPHLAFEGEEVSTILGLTAAGLGAAVL
EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCHHHC
PKTAEHSYFPVVFLPVADYQCERTIALAQLKNHALSPAAERFKQFALEYYKARN
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELHQIDNFIAAAAHQHFTNAAKERMISQPALSRSIIRLEEELGAPLFFRDTKAVRLTRH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCEEEEECC
GEQFLIKAKQARRALNEGVEQVKKNMSLEHGEISVSFLHTLGLRLMPQLIAEFKKLYPNV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TFRLYQGANETLRKMVETGDADICLSSPPLPSELLQWTVLEKEPLYAVLPENHPLAGNKS
EEEEECCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCC
IQMKEMQDEDFVGFKPGYGLRYMFDLMCRDLNIHPHLAFEGEEVSTILGLTAAGLGAAVL
EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCHHHC
PKTAEHSYFPVVFLPVADYQCERTIALAQLKNHALSPAAERFKQFALEYYKARN
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]