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The map label for this gene is recO

Identifier: 154686788

GI number: 154686788

Start: 2478447

End: 2479214

Strand: Reverse

Name: recO

Synonym: RBAM_023580

Alternate gene names: 154686788

Gene position: 2479214-2478447 (Counterclockwise)

Preceding gene: 154686789

Following gene: 154686787

Centisome position: 63.27

GC content: 46.35

Gene sequence:

>768_bases
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Upstream 100 bases:

>100_bases
GAACCTGGAAAGACCCGAAGAACCGGAAGATGAGCTAGCCCGAATTGATTTTCCAATTTTGTAAACCTCTTGGCCCCTCC
CATTGTTGGAAGGTGCGGAA

Downstream 100 bases:

>100_bases
CATTCTGCCCATCTTTTTATATGATCATTTATTATAAAATATGTTGCAGTGACAGAAAGAAGTACTTGCGTCCAACTCAT
ACAAGCGACCTTAGGGCAGT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Sequences:

>Translated_255_residues
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS
>Mature_255_residues
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_BACA2 (A7Z6U2)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421949.1
- STRING:   A7Z6U2
- EnsemblBacteria:   EBBACT00000005812
- GeneID:   5461366
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_023580
- eggNOG:   COG1381
- GeneTree:   EBGT00050000001475
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- ProtClustDB:   PRK00085
- BioCyc:   BAMY326423:RBAM_023580-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29311; Mature: 29311

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLM
CCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHH
QRTSGLGTLQQGEMILSMRTIREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
RLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEGTFHFSIRDNGFICHRCFEKD
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCEEEEEEECCCEEEEECCCCC
PYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
DQMESMKNLLDENKS
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLM
CCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHH
QRTSGLGTLQQGEMILSMRTIREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
RLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEGTFHFSIRDNGFICHRCFEKD
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCEEEEEEECCCEEEEECCCCC
PYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
DQMESMKNLLDENKS
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA