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The map label for this gene is nusB

Identifier: 154686696

GI number: 154686696

Start: 2403062

End: 2403454

Strand: Reverse

Name: nusB

Synonym: RBAM_022650

Alternate gene names: 154686696

Gene position: 2403454-2403062 (Counterclockwise)

Preceding gene: 154686697

Following gene: 154686695

Centisome position: 61.33

GC content: 44.78

Gene sequence:

>393_bases
ATGAAAAGAAGAACAGCTAGAGAAAAAGCTTTGCAGGCACTTTTTCAGATTGATGTCAGCGATATTGCACCGAACGATGC
CATTGAGCACGCGCTTGATGGTGAAAAAACAGATGCCTTCTTTGAACAGCTGGTGTACGGAGTGATCGAACATCAGGTTC
AGCTTGATGAAATGATTTCCGGCCATCTCGTCAATTGGAAGCTTGACCGGATTGCAAACGTAGACCGCGCGATCCTGCGT
CTGGCGGTGTATGAAATGGTTTATTCTGACGACATTCCTGCTAACGTGTCATTAAACGAAGCAATCGAGCTGGCAAAACG
GTTCGGCGACGATAAAGCTGCAAAATTCGTAAACGGGGTTCTTTCTAACATTAAAACTGATATCGAATCATAG

Upstream 100 bases:

>100_bases
GAAAAAACCTAAATTTCGACATGCGATTGAGAAAAAAATATGTTATGATCTCTTTAAGCTTAACGACAAGCGGATAAAGC
GGATCTGAAGGAGAAAGAAA

Downstream 100 bases:

>100_bases
GAGGAAAGAAAATGACTGCAACAATCATCGACGGAAAAGAAACGGCTAAAGAAAAACGCGAACAATTGGCAAAAGAAGTA
GAAGAGCTGAAAGCACAAGG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKRRTAREKALQALFQIDVSDIAPNDAIEHALDGEKTDAFFEQLVYGVIEHQVQLDEMISGHLVNWKLDRIANVDRAILR
LAVYEMVYSDDIPANVSLNEAIELAKRFGDDKAAKFVNGVLSNIKTDIES

Sequences:

>Translated_130_residues
MKRRTAREKALQALFQIDVSDIAPNDAIEHALDGEKTDAFFEQLVYGVIEHQVQLDEMISGHLVNWKLDRIANVDRAILR
LAVYEMVYSDDIPANVSLNEAIELAKRFGDDKAAKFVNGVLSNIKTDIES
>Mature_130_residues
MKRRTAREKALQALFQIDVSDIAPNDAIEHALDGEKTDAFFEQLVYGVIEHQVQLDEMISGHLVNWKLDRIANVDRAILR
LAVYEMVYSDDIPANVSLNEAIELAKRFGDDKAAKFVNGVLSNIKTDIES

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=121, Percent_Identity=38.8429752066116, Blast_Score=73, Evalue=6e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BACA2 (A7Z6K0)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421857.1
- ProteinModelPortal:   A7Z6K0
- SMR:   A7Z6K0
- STRING:   A7Z6K0
- EnsemblBacteria:   EBBACT00000005415
- GeneID:   5459561
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_022650
- eggNOG:   COG0781
- GeneTree:   EBGT00070000032128
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- ProtClustDB:   PRK00202
- BioCyc:   BAMY326423:RBAM_022650-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 14645; Mature: 14645

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRTAREKALQALFQIDVSDIAPNDAIEHALDGEKTDAFFEQLVYGVIEHQVQLDEMIS
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GHLVNWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELAKRFGDDKAAKFVNGV
CHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LSNIKTDIES
HHHHHHHCCC
>Mature Secondary Structure
MKRRTAREKALQALFQIDVSDIAPNDAIEHALDGEKTDAFFEQLVYGVIEHQVQLDEMIS
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GHLVNWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELAKRFGDDKAAKFVNGV
CHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LSNIKTDIES
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA