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The map label for this gene is ypbE [H]

Identifier: 154686546

GI number: 154686546

Start: 2210949

End: 2211707

Strand: Reverse

Name: ypbE [H]

Synonym: RBAM_021150

Alternate gene names: 154686546

Gene position: 2211707-2210949 (Counterclockwise)

Preceding gene: 154686547

Following gene: 154686545

Centisome position: 56.44

GC content: 46.64

Gene sequence:

>759_bases
ATGACGGAAATGTCAAGAGTTGAAAGAAGAAAAGCTCAGCTGCGTGCCGAGCAGCAGGTTGCCGCGGCCGCGGATGAACA
AATTGAATATCTTGAAGACAGCCTCCCGACAAGACAATCTGTAAAAGAGGAGCGTAAAAAAAAGGAAGAGCAGGTGAAGG
AAAAAACCAAAACAAAAACGCCGCTGTTCACTTTTCTGACCGTCCTGTTCATTATCGTAACAATCGGTGTCTTTTTCGGT
CTTCTTTATATGACGAACAGCAGCAGATTTGACCCGAAGGACTATGAAGATGTCTTTATAGACCACAGTGAAAGCGCGCC
TGCCGTTATTCCGAAAGGCGCTCAGAAAGAAACGTCAGAAACCGCTCTTTTAGAACAACCGAAAAAAAAGTCTGACGACA
AAGATAAGAAAGAAGCGGCTGCACCTGAAAAAACGAAAGAAAAACCAAGTGAAAAAACGGAAACGCCCTCAGAAAAACAA
GTAAAGCCGACAGACACCGAATACGCGGAGACAAAACAGCAGTCTCCGCCGGCTGTCCGTGAAAAAGCGGCTCCGGCTGA
GGTGAGTGATCAAGCCGGGACTGTCCCAAAAAAAGTGCGGACCGTACAGCATACTGTACAGCCGAAAGAAACGCTTTACC
GCATTTCAATGAAATACTATAAAAGCCGGGCGGGCGAAGAAAAAATCCGCAGCTACAACGGATTAAACGGAAACGACGTG
TACACCGGCCAGGTTCTGAACATTCCGCTGTCTGATTAA

Upstream 100 bases:

>100_bases
GAATGGACCGGCAATTTATTCGTTCCGGTTACAGCGCATTTTATTATTGATGCGGTATTTGCCTGTCAGATCCGTTTTCA
ATATGTTAGGAGGGGTTTGC

Downstream 100 bases:

>100_bases
AATAAATGCATGTTTTCACCGCGTTTTTCATATAGTGTACCAATGAAAACGGACAAGGTGTGAAGCGCATGGATTCTTTA
TGGAAGCAATTAGACCGATT

Product: YpbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTEMSRVERRKAQLRAEQQVAAAADEQIEYLEDSLPTRQSVKEERKKKEEQVKEKTKTKTPLFTFLTVLFIIVTIGVFFG
LLYMTNSSRFDPKDYEDVFIDHSESAPAVIPKGAQKETSETALLEQPKKKSDDKDKKEAAAPEKTKEKPSEKTETPSEKQ
VKPTDTEYAETKQQSPPAVREKAAPAEVSDQAGTVPKKVRTVQHTVQPKETLYRISMKYYKSRAGEEKIRSYNGLNGNDV
YTGQVLNIPLSD

Sequences:

>Translated_252_residues
MTEMSRVERRKAQLRAEQQVAAAADEQIEYLEDSLPTRQSVKEERKKKEEQVKEKTKTKTPLFTFLTVLFIIVTIGVFFG
LLYMTNSSRFDPKDYEDVFIDHSESAPAVIPKGAQKETSETALLEQPKKKSDDKDKKEAAAPEKTKEKPSEKTETPSEKQ
VKPTDTEYAETKQQSPPAVREKAAPAEVSDQAGTVPKKVRTVQHTVQPKETLYRISMKYYKSRAGEEKIRSYNGLNGNDV
YTGQVLNIPLSD
>Mature_251_residues
TEMSRVERRKAQLRAEQQVAAAADEQIEYLEDSLPTRQSVKEERKKKEEQVKEKTKTKTPLFTFLTVLFIIVTIGVFFGL
LYMTNSSRFDPKDYEDVFIDHSESAPAVIPKGAQKETSETALLEQPKKKSDDKDKKEAAAPEKTKEKPSEKTETPSEKQV
KPTDTEYAETKQQSPPAVREKAAPAEVSDQAGTVPKKVRTVQHTVQPKETLYRISMKYYKSRAGEEKIRSYNGLNGNDVY
TGQVLNIPLSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 28548; Mature: 28417

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMSRVERRKAQLRAEQQVAAAADEQIEYLEDSLPTRQSVKEERKKKEEQVKEKTKTKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
PLFTFLTVLFIIVTIGVFFGLLYMTNSSRFDPKDYEDVFIDHSESAPAVIPKGAQKETSE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCHHHHH
TALLEQPKKKSDDKDKKEAAAPEKTKEKPSEKTETPSEKQVKPTDTEYAETKQQSPPAVR
HHHHHCCHHCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHH
EKAAPAEVSDQAGTVPKKVRTVQHTVQPKETLYRISMKYYKSRAGEEKIRSYNGLNGNDV
HHCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCE
YTGQVLNIPLSD
EECEEEECCCCC
>Mature Secondary Structure 
TEMSRVERRKAQLRAEQQVAAAADEQIEYLEDSLPTRQSVKEERKKKEEQVKEKTKTKT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
PLFTFLTVLFIIVTIGVFFGLLYMTNSSRFDPKDYEDVFIDHSESAPAVIPKGAQKETSE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCHHHHH
TALLEQPKKKSDDKDKKEAAAPEKTKEKPSEKTETPSEKQVKPTDTEYAETKQQSPPAVR
HHHHHCCHHCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHH
EKAAPAEVSDQAGTVPKKVRTVQHTVQPKETLYRISMKYYKSRAGEEKIRSYNGLNGNDV
HHCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCE
YTGQVLNIPLSD
EECEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]