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The map label for this gene is ypbF [H]

Identifier: 154686545

GI number: 154686545

Start: 2210422

End: 2210880

Strand: Reverse

Name: ypbF [H]

Synonym: RBAM_021140

Alternate gene names: 154686545

Gene position: 2210880-2210422 (Counterclockwise)

Preceding gene: 154686546

Following gene: 154686544

Centisome position: 56.42

GC content: 40.52

Gene sequence:

>459_bases
ATGGATTCTTTATGGAAGCAATTAGACCGATTTGCTGACGGACCGACGAAACAAATGCTTCAGGCGCTGGTGAAACGGAA
ATTAAAATACGAAAATTATGCCGTACAATGCCGAAGATGGCAGTGGGCGTCCCTCGTTTGTTTTTCCCTGATGTGCATAC
TGCTGATGTTTAAAAGCTTTAATGCCCCCCAAGCCTCTCCGCAGCTGATTCTGCAGGAAATATTAGGCCATACGGTTTAC
TTGTGCTGGATTATGGCTTCCGCTTTTGCGTATTGCACTTCTTATTATTTTAAAAAAAAGGAAGAAAAAGCTGAGGGTGA
ATTTCATAAACTGAGATGTGAAATTATCCAAAAAAGCACGGATTTATGGCCCCAGCCTGAAAAATGGAGGGCGAGAGAAT
CTGTTTTTCACTTGATGAAACATCGGTATGATATCAATCTTTATTTTGAAAGCAAATAA

Upstream 100 bases:

>100_bases
GCCAGGTTCTGAACATTCCGCTGTCTGATTAAAATAAATGCATGTTTTCACCGCGTTTTTCATATAGTGTACCAATGAAA
ACGGACAAGGTGTGAAGCGC

Downstream 100 bases:

>100_bases
AATGAGGCGTTTTCCGGAAAGGATAGAAACGTCTTTTTTTGTTTGTCCGTCTAATATAAGACAATGACAGAATGGAGAGT
GCGTTTATGAAGCTTACAGC

Product: YpbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MDSLWKQLDRFADGPTKQMLQALVKRKLKYENYAVQCRRWQWASLVCFSLMCILLMFKSFNAPQASPQLILQEILGHTVY
LCWIMASAFAYCTSYYFKKKEEKAEGEFHKLRCEIIQKSTDLWPQPEKWRARESVFHLMKHRYDINLYFESK

Sequences:

>Translated_152_residues
MDSLWKQLDRFADGPTKQMLQALVKRKLKYENYAVQCRRWQWASLVCFSLMCILLMFKSFNAPQASPQLILQEILGHTVY
LCWIMASAFAYCTSYYFKKKEEKAEGEFHKLRCEIIQKSTDLWPQPEKWRARESVFHLMKHRYDINLYFESK
>Mature_152_residues
MDSLWKQLDRFADGPTKQMLQALVKRKLKYENYAVQCRRWQWASLVCFSLMCILLMFKSFNAPQASPQLILQEILGHTVY
LCWIMASAFAYCTSYYFKKKEEKAEGEFHKLRCEIIQKSTDLWPQPEKWRARESVFHLMKHRYDINLYFESK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020210
- ProDom:   PD089241 [H]

Pfam domain/function: PF10864 DUF2663 [H]

EC number: NA

Molecular weight: Translated: 18308; Mature: 18308

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLWKQLDRFADGPTKQMLQALVKRKLKYENYAVQCRRWQWASLVCFSLMCILLMFKSF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NAPQASPQLILQEILGHTVYLCWIMASAFAYCTSYYFKKKEEKAEGEFHKLRCEIIQKST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
DLWPQPEKWRARESVFHLMKHRYDINLYFESK
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEECC
>Mature Secondary Structure
MDSLWKQLDRFADGPTKQMLQALVKRKLKYENYAVQCRRWQWASLVCFSLMCILLMFKSF
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NAPQASPQLILQEILGHTVYLCWIMASAFAYCTSYYFKKKEEKAEGEFHKLRCEIIQKST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
DLWPQPEKWRARESVFHLMKHRYDINLYFESK
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]