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The map label for this gene is yocB [H]

Identifier: 154686324

GI number: 154686324

Start: 2013481

End: 2014266

Strand: Reverse

Name: yocB [H]

Synonym: RBAM_018920

Alternate gene names: 154686324

Gene position: 2014266-2013481 (Counterclockwise)

Preceding gene: 154686327

Following gene: 154686323

Centisome position: 51.4

GC content: 44.27

Gene sequence:

>786_bases
ATGGCAATTGACTCACTCATCGGCAAATTGAAGTACGTAATGACGGAATCTCCTGATAAAATGCTTTCCTTATATGTAAA
TACGGATATGAGAAATCCGGATCAGCAGGGGGGAGAGTGGAAAATCGCCTTGAAAACCGGTTTTCGGAGATTAAAAGAGT
ATCTGTCTGCCAGTGATCCGGAAGAAAAAAAATCTCTCGTCCGCATCATGGAACGTGTCTATCAATATATCGAGGGGCTT
GGTAAAGAGATGCCGCGAAGTCTTGTATTTTTTGCATCGGGAGAAGGCGGTATTTGGGAGACGATTCAATTGCAGGTGCC
TGTCGAAACACGATTTTATTGGGAGGAAGCGGCTGTCCTTGATCAATTAGAACTTCTTCGTGAACAATTTCCGAGCACGG
CTTTTATTCTCACCCAGCAGAATGAAGTGAAGATCATAGAAACCGTACTCGGAAAAATTGAAGGGGTGGAGCATTATCAT
TACGACGTCATCAATGAATCGTGGAAACCGCAGGATGTAAGCGGAAGCTCCTCCGCGTCGATGGACGAAGACGCTGCCAA
AGCCCACGTCGAAGAAAACCAAAACAGGCTGTATAAACGATTGGCTTCAAACCTTGATCAAAAGGCCGCTTCACACCAAT
GGGAGCGTCTCGTAATCGCAGGGGACAAAGAAACAGCCGATATTCTCGATCAGCATATGAATAAACCGATAGATCGGATC
ATTCCAAAAAATCTGTTGAATGAAAACGAACATAAGGTGATAGAAGAACTGTTGAAGGAAGCATAA

Upstream 100 bases:

>100_bases
CTTTTTTAGAAAAGTCTGCCGTTTATATGTGGATTGACGTTTTTAAGGCGGTGCGGATAGGGAAAGGAACAGTGAGCAGC
GGAAAAAGGAGGAATCTATA

Downstream 100 bases:

>100_bases
TATGACGAAAGGCCGGGTCTCAAACACCCGGTCTTTTTAGGGCTTAAGTTTGTCTAATTTCTGACGAAGCGGGCGAAACC
GTTGACATCAAAGCTGAATT

Product: YocB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MAIDSLIGKLKYVMTESPDKMLSLYVNTDMRNPDQQGGEWKIALKTGFRRLKEYLSASDPEEKKSLVRIMERVYQYIEGL
GKEMPRSLVFFASGEGGIWETIQLQVPVETRFYWEEAAVLDQLELLREQFPSTAFILTQQNEVKIIETVLGKIEGVEHYH
YDVINESWKPQDVSGSSSASMDEDAAKAHVEENQNRLYKRLASNLDQKAASHQWERLVIAGDKETADILDQHMNKPIDRI
IPKNLLNENEHKVIEELLKEA

Sequences:

>Translated_261_residues
MAIDSLIGKLKYVMTESPDKMLSLYVNTDMRNPDQQGGEWKIALKTGFRRLKEYLSASDPEEKKSLVRIMERVYQYIEGL
GKEMPRSLVFFASGEGGIWETIQLQVPVETRFYWEEAAVLDQLELLREQFPSTAFILTQQNEVKIIETVLGKIEGVEHYH
YDVINESWKPQDVSGSSSASMDEDAAKAHVEENQNRLYKRLASNLDQKAASHQWERLVIAGDKETADILDQHMNKPIDRI
IPKNLLNENEHKVIEELLKEA
>Mature_260_residues
AIDSLIGKLKYVMTESPDKMLSLYVNTDMRNPDQQGGEWKIALKTGFRRLKEYLSASDPEEKKSLVRIMERVYQYIEGLG
KEMPRSLVFFASGEGGIWETIQLQVPVETRFYWEEAAVLDQLELLREQFPSTAFILTQQNEVKIIETVLGKIEGVEHYHY
DVINESWKPQDVSGSSSASMDEDAAKAHVEENQNRLYKRLASNLDQKAASHQWERLVIAGDKETADILDQHMNKPIDRII
PKNLLNENEHKVIEELLKEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019291 [H]

Pfam domain/function: PF10116 Host_attach [H]

EC number: NA

Molecular weight: Translated: 30039; Mature: 29908

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDSLIGKLKYVMTESPDKMLSLYVNTDMRNPDQQGGEWKIALKTGFRRLKEYLSASDP
CCHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCC
EEKKSLVRIMERVYQYIEGLGKEMPRSLVFFASGEGGIWETIQLQVPVETRFYWEEAAVL
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEEEEEEECHHHHHHHHHHHHH
DQLELLREQFPSTAFILTQQNEVKIIETVLGKIEGVEHYHYDVINESWKPQDVSGSSSAS
HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC
MDEDAAKAHVEENQNRLYKRLASNLDQKAASHQWERLVIAGDKETADILDQHMNKPIDRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHCCCHHHH
IPKNLLNENEHKVIEELLKEA
CCHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AIDSLIGKLKYVMTESPDKMLSLYVNTDMRNPDQQGGEWKIALKTGFRRLKEYLSASDP
CHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCC
EEKKSLVRIMERVYQYIEGLGKEMPRSLVFFASGEGGIWETIQLQVPVETRFYWEEAAVL
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEEEEEEECHHHHHHHHHHHHH
DQLELLREQFPSTAFILTQQNEVKIIETVLGKIEGVEHYHYDVINESWKPQDVSGSSSAS
HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC
MDEDAAKAHVEENQNRLYKRLASNLDQKAASHQWERLVIAGDKETADILDQHMNKPIDRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHCCCHHHH
IPKNLLNENEHKVIEELLKEA
CCHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]