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The map label for this gene is ykuD [H]

Identifier: 154685816

GI number: 154685816

Start: 1347030

End: 1347530

Strand: Reverse

Name: ykuD [H]

Synonym: RBAM_013830

Alternate gene names: 154685816

Gene position: 1347530-1347030 (Counterclockwise)

Preceding gene: 154685817

Following gene: 154685815

Centisome position: 34.39

GC content: 48.5

Gene sequence:

>501_bases
ATGAAACTGCTGACATATCAAGTGAAACAAGGAGAAACCATCTCAAGCATTGCGCAAGACTTCAGAATAAGCACTGCTGC
TCTCCTTCAGGCAAATCCCTCAATCCAATCGGTCATATACGCGGGACAGCATATTATCATACCGAATCTTCCCGACCCAT
CCACCATTCCCTACTCCATCATCGTGTATATCGGAGCGAAGAAACTGGAGTTATACCGCCTTGGCAGGCTCATCCGTACG
TACCCCATCGCAGTCGGAAAAATATTGACGACCACGCCGACCGGAGAATTTTACATCGTGAACCGCCAGCCTAAGCCCGG
CGGCCCGTTCGGCGCTTATTGGCTCAGCCTCTCTAAAATTCATTACGGCATTCACGGAACAAATAATCCTTCCTCCATCG
GCAAAGCGGTATCAAAAGGATGCATCCGGATGTATAATCAGGACGTCACTGAACTTGCCGCTACCGTTCCTAATGGAACA
AGGGTGACTATTATAAGATAG

Upstream 100 bases:

>100_bases
CGCTGTTCACATTGAAAACCGAGCAAAAATAAGACTTTTATCCTGATGCACAAACACCCCCTCCGTAATATGTATATGGA
AAAGAGCAAAAAGGAGGGTG

Downstream 100 bases:

>100_bases
AAAGATCTTATTTGTTAATGGAACGAGCTGATGATAATATATTACAGTGGGACCTCTAGGGTAAGGAGCGTGTTTATGGA
TATATTTAAAAATCGCAATT

Product: YkuD

Products: NA

Alternate protein names: Spore protein YkuD [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKLLTYQVKQGETISSIAQDFRISTAALLQANPSIQSVIYAGQHIIIPNLPDPSTIPYSIIVYIGAKKLELYRLGRLIRT
YPIAVGKILTTTPTGEFYIVNRQPKPGGPFGAYWLSLSKIHYGIHGTNNPSSIGKAVSKGCIRMYNQDVTELAATVPNGT
RVTIIR

Sequences:

>Translated_166_residues
MKLLTYQVKQGETISSIAQDFRISTAALLQANPSIQSVIYAGQHIIIPNLPDPSTIPYSIIVYIGAKKLELYRLGRLIRT
YPIAVGKILTTTPTGEFYIVNRQPKPGGPFGAYWLSLSKIHYGIHGTNNPSSIGKAVSKGCIRMYNQDVTELAATVPNGT
RVTIIR
>Mature_166_residues
MKLLTYQVKQGETISSIAQDFRISTAALLQANPSIQSVIYAGQHIIIPNLPDPSTIPYSIIVYIGAKKLELYRLGRLIRT
YPIAVGKILTTTPTGEFYIVNRQPKPGGPFGAYWLSLSKIHYGIHGTNNPSSIGKAVSKGCIRMYNQDVTELAATVPNGT
RVTIIR

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=195, Percent_Identity=31.2820512820513, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788299, Length=187, Percent_Identity=27.807486631016, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787040, Length=193, Percent_Identity=25.9067357512953, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 18202; Mature: 18202

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLTYQVKQGETISSIAQDFRISTAALLQANPSIQSVIYAGQHIIIPNLPDPSTIPYSI
CCEEEEEECCCCHHHHHHHHHCCHHHEEEECCCCHHHHEECCCEEEECCCCCCCCCCEEE
IVYIGAKKLELYRLGRLIRTYPIAVGKILTTTPTGEFYIVNRQPKPGGPFGAYWLSLSKI
EEEECCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCCCCCCHHHHHEEEEHE
HYGIHGTNNPSSIGKAVSKGCIRMYNQDVTELAATVPNGTRVTIIR
EEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MKLLTYQVKQGETISSIAQDFRISTAALLQANPSIQSVIYAGQHIIIPNLPDPSTIPYSI
CCEEEEEECCCCHHHHHHHHHCCHHHEEEECCCCHHHHEECCCEEEECCCCCCCCCCEEE
IVYIGAKKLELYRLGRLIRTYPIAVGKILTTTPTGEFYIVNRQPKPGGPFGAYWLSLSKI
EEEECCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCCCCCCHHHHHEEEEHE
HYGIHGTNNPSSIGKAVSKGCIRMYNQDVTELAATVPNGTRVTIIR
EEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]