Click here to switch to the map view.

The map label for this gene is ykoV [H]

Identifier: 154685752

GI number: 154685752

Start: 1280954

End: 1281835

Strand: Reverse

Name: ykoV [H]

Synonym: RBAM_013190

Alternate gene names: 154685752

Gene position: 1281835-1280954 (Counterclockwise)

Preceding gene: 154685757

Following gene: 154685751

Centisome position: 32.71

GC content: 49.09

Gene sequence:

>882_bases
ATGCACACGATGTGGAAGGGTTCGATCAGTTTCGGCCTCGTCAATATCCCGGTCAAGCTCTTTGCGGCCACTGAAGATAA
AGATATAAAATTCCGCAGTCTTCATAAAGAAGACCATGCGCCGATTAAATACGAAAAAATCTGCACCGGATGTGAAAAAA
GTCTGGAACCTGATGAAATTGTGAAAGGCTATGAGTATGTAAAAGGGAAATACGTCATTATGACAGACGAAGACTTGAAA
GACGTAAAACAGGAACATGAAGAAAAAGCGGTTGAGATTGTTGACTTTGTCCAGCTGCAGGAAATTGATCCGATTTATTT
TAACCGGTCGTATTATGTCGGGCCGGGAGATAACGGCACAAAAGCCTATACACTTCTGCGGGAAGCGCTAAGGACGACGG
GTAAAATCGGGATTGCCTCCATTACGATCCGCTCTAAACAGCAGCTTGCGATTCTTCGCGTGTATGACAACTGCATCGTG
ATGGAATCCATTCATTATCCGGATGAAGTCAGAAATGCCGGACATGTGCCAGGCGTTCCCGAGCAGACAGCCGTTAATGA
AAAAGAGCTGCAGACGGCGATTACGTTAATTAATGAGCTGACAACCGAGTTTGACCCGGAACAATACGAAGATACGTACC
GGAAAGCCCTTCTCGCTAAAATTAACGATAAGCTCGAACATGAAGAAGCGGGCGTGACACCGGCTGCTGCCGGCCCGCGC
GAAGATGTCATTGATCTTGTCAGCGCGCTTCAGGCAAGCATTGACCGGACGAAGCGGCCGGATCGCGAACAGGCTGCGCC
GGCGCGGACAAAAGACGCCGCGTCAGCAGGCGGCGGAGGCAAAAAGCAGAAGACGACCAGACAAAAAGCCGGAACGTCTT
AA

Upstream 100 bases:

>100_bases
AATGGAACAGCCGCTCCATGAAGCGCCGCAACACCCATAAGTTGCTACACATGGAACGGACCCGTTTATCCACAATAAAG
ACAAAAAGGAGTTTTTATTC

Downstream 100 bases:

>100_bases
TCATGGTGCTGACGATGCAGCCGATTTTGACCTCTGTACCGCCTGAAGGCAGTGAGTGGCGCTATGAGGTAAAGTATGAC
GGATTCCGCTGTCTTCTCCG

Product: YkoV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTGCEKSLEPDEIVKGYEYVKGKYVIMTDEDLK
DVKQEHEEKAVEIVDFVQLQEIDPIYFNRSYYVGPGDNGTKAYTLLREALRTTGKIGIASITIRSKQQLAILRVYDNCIV
MESIHYPDEVRNAGHVPGVPEQTAVNEKELQTAITLINELTTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAAGPR
EDVIDLVSALQASIDRTKRPDREQAAPARTKDAASAGGGGKKQKTTRQKAGTS

Sequences:

>Translated_293_residues
MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTGCEKSLEPDEIVKGYEYVKGKYVIMTDEDLK
DVKQEHEEKAVEIVDFVQLQEIDPIYFNRSYYVGPGDNGTKAYTLLREALRTTGKIGIASITIRSKQQLAILRVYDNCIV
MESIHYPDEVRNAGHVPGVPEQTAVNEKELQTAITLINELTTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAAGPR
EDVIDLVSALQASIDRTKRPDREQAAPARTKDAASAGGGGKKQKTTRQKAGTS
>Mature_293_residues
MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTGCEKSLEPDEIVKGYEYVKGKYVIMTDEDLK
DVKQEHEEKAVEIVDFVQLQEIDPIYFNRSYYVGPGDNGTKAYTLLREALRTTGKIGIASITIRSKQQLAILRVYDNCIV
MESIHYPDEVRNAGHVPGVPEQTAVNEKELQTAITLINELTTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAAGPR
EDVIDLVSALQASIDRTKRPDREQAAPARTKDAASAGGGGKKQKTTRQKAGTS

Specific function: Could be involved in DNA repair during spore germination [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Spore core. Note=Expressed in the center of the spore core, presumably with the nucleoid [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 32740; Mature: 32740

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTGCEKSLEPDEI
CCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH
VKGYEYVKGKYVIMTDEDLKDVKQEHEEKAVEIVDFVQLQEIDPIYFNRSYYVGPGDNGT
HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCH
KAYTLLREALRTTGKIGIASITIRSKQQLAILRVYDNCIVMESIHYPDEVRNAGHVPGVP
HHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCEEEEECCCCCHHHHCCCCCCCCC
EQTAVNEKELQTAITLINELTTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAAGPR
CHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EDVIDLVSALQASIDRTKRPDREQAAPARTKDAASAGGGGKKQKTTRQKAGTS
HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTGCEKSLEPDEI
CCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH
VKGYEYVKGKYVIMTDEDLKDVKQEHEEKAVEIVDFVQLQEIDPIYFNRSYYVGPGDNGT
HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCH
KAYTLLREALRTTGKIGIASITIRSKQQLAILRVYDNCIVMESIHYPDEVRNAGHVPGVP
HHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCEEEEECCCCCHHHHCCCCCCCCC
EQTAVNEKELQTAITLINELTTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAAGPR
CHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EDVIDLVSALQASIDRTKRPDREQAAPARTKDAASAGGGGKKQKTTRQKAGTS
HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]