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The map label for this gene is yhdW [H]

Identifier: 154685419

GI number: 154685419

Start: 964366

End: 965082

Strand: Reverse

Name: yhdW [H]

Synonym: RBAM_009850

Alternate gene names: 154685419

Gene position: 965082-964366 (Counterclockwise)

Preceding gene: 154685423

Following gene: 154685418

Centisome position: 24.63

GC content: 47.28

Gene sequence:

>717_bases
TTGTATACCATCGCTCATCGCGGCGCATCCGGTTACGCGCCCGAAAATACATTTGCGGCATTTGATATCGCTGCCGAAAT
GAACGCTGATTTCATTGAGCTTGACGTCCAGCTCACAAAAGACGGCCAGATTGTCGTCATCCATGATGACAAAGTCGACC
GGACGACGGACGGCTCCGGTTTTGTAAAAGATTTTACGCTGAAGAAGCTGCAGTCTCTGGATGCCGGCAGCTGGTATGGG
GCTGAGTTTAAAGGGGAGCGGATTCCCCTGCTCGAAGAGGTCTTGAAGCGTTATCATTCTGAAATCGGTTTTTTAATTGA
ACTGAAAGGGCACGTTTCTCAAGTCGGTCTTGAAAAAGCAGTCGGCCAGCTGTTAAGCAGGTTTTCCTTTTCCATCCACC
CTATCGTTCAATCATTCAGCCTCAAGTCAATTCAGACCTTTCACGACATGTATCCGCCCGTTCCGACTGCAATAATTGCA
AGACCCAGCTTCGGGATGTTTTCCAAAAGCCAGCTGAACGCCTACAAATCAGCCGTAAATTATGTCAATATTAAATATAC
CCGCCTGAATCGGTTCTTGATTTCCACCGCTCACAGACACGGCCTGAAAGTATTTGCCTGGACGGTCAGAAATCAAAAGA
CGGCCGAAAAACTGCAAATGATGGCAGTTGACGGCATTGTAACTGATTTTCCGGATTTTATTTCTAAGGATGGCTGA

Upstream 100 bases:

>100_bases
TTCCAAAAAAATACTGTTTCGCACATTCACCAGTTTGAATCGCTGTGCATATACGAATCTGATATAATAACAGAAATGCC
CATGAGGGGAGCTGACAAGC

Downstream 100 bases:

>100_bases
TATGAAACAATACATCGCAATTTTTATCGGAGGCGCGCTTGGCGCATTGCTCCGCTTTGAAATGAGCGCGCACATTCACA
GCAGTTCTTTCCCGGCGGCC

Product: YhdW

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MYTIAHRGASGYAPENTFAAFDIAAEMNADFIELDVQLTKDGQIVVIHDDKVDRTTDGSGFVKDFTLKKLQSLDAGSWYG
AEFKGERIPLLEEVLKRYHSEIGFLIELKGHVSQVGLEKAVGQLLSRFSFSIHPIVQSFSLKSIQTFHDMYPPVPTAIIA
RPSFGMFSKSQLNAYKSAVNYVNIKYTRLNRFLISTAHRHGLKVFAWTVRNQKTAEKLQMMAVDGIVTDFPDFISKDG

Sequences:

>Translated_238_residues
MYTIAHRGASGYAPENTFAAFDIAAEMNADFIELDVQLTKDGQIVVIHDDKVDRTTDGSGFVKDFTLKKLQSLDAGSWYG
AEFKGERIPLLEEVLKRYHSEIGFLIELKGHVSQVGLEKAVGQLLSRFSFSIHPIVQSFSLKSIQTFHDMYPPVPTAIIA
RPSFGMFSKSQLNAYKSAVNYVNIKYTRLNRFLISTAHRHGLKVFAWTVRNQKTAEKLQMMAVDGIVTDFPDFISKDG
>Mature_238_residues
MYTIAHRGASGYAPENTFAAFDIAAEMNADFIELDVQLTKDGQIVVIHDDKVDRTTDGSGFVKDFTLKKLQSLDAGSWYG
AEFKGERIPLLEEVLKRYHSEIGFLIELKGHVSQVGLEKAVGQLLSRFSFSIHPIVQSFSLKSIQTFHDMYPPVPTAIIA
RPSFGMFSKSQLNAYKSAVNYVNIKYTRLNRFLISTAHRHGLKVFAWTVRNQKTAEKLQMMAVDGIVTDFPDFISKDG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=164, Percent_Identity=35.9756097560976, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI260763876, Length=270, Percent_Identity=26.2962962962963, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI260763878, Length=133, Percent_Identity=34.5864661654135, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI260763880, Length=133, Percent_Identity=34.5864661654135, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1789858, Length=238, Percent_Identity=31.0924369747899, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788572, Length=82, Percent_Identity=43.9024390243902, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17542344, Length=273, Percent_Identity=25.6410256410256, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26731; Mature: 26731

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTIAHRGASGYAPENTFAAFDIAAEMNADFIELDVQLTKDGQIVVIHDDKVDRTTDGSG
CEEEEECCCCCCCCCCCEEEEEEHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCC
FVKDFTLKKLQSLDAGSWYGAEFKGERIPLLEEVLKRYHSEIGFLIELKGHVSQVGLEKA
CHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
VGQLLSRFSFSIHPIVQSFSLKSIQTFHDMYPPVPTAIIARPSFGMFSKSQLNAYKSAVN
HHHHHHHHCCHHHHHHHHHCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
YVNIKYTRLNRFLISTAHRHGLKVFAWTVRNQKTAEKLQMMAVDGIVTDFPDFISKDG
EEEEEEEHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MYTIAHRGASGYAPENTFAAFDIAAEMNADFIELDVQLTKDGQIVVIHDDKVDRTTDGSG
CEEEEECCCCCCCCCCCEEEEEEHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCC
FVKDFTLKKLQSLDAGSWYGAEFKGERIPLLEEVLKRYHSEIGFLIELKGHVSQVGLEKA
CHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
VGQLLSRFSFSIHPIVQSFSLKSIQTFHDMYPPVPTAIIARPSFGMFSKSQLNAYKSAVN
HHHHHHHHCCHHHHHHHHHCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
YVNIKYTRLNRFLISTAHRHGLKVFAWTVRNQKTAEKLQMMAVDGIVTDFPDFISKDG
EEEEEEEHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]