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The map label for this gene is yfkA [H]

Identifier: 154685272

GI number: 154685272

Start: 808662

End: 809783

Strand: Reverse

Name: yfkA [H]

Synonym: RBAM_008180

Alternate gene names: 154685272

Gene position: 809783-808662 (Counterclockwise)

Preceding gene: 154685275

Following gene: 154685271

Centisome position: 20.67

GC content: 50.53

Gene sequence:

>1122_bases
ATGACACAAAACACAACACTGCGTCCGATCACACCGGAGTACGATCCTTGGGAAGCGTACATGGATGTCGACCAGTATGG
AGATATGAAACTGACGAACGTTGAATTCACAACGACGACTTTGTGCAATATGAGATGCGAGCACTGCGCCGTCGGGTACA
CGCTCCAGCCGAAAGACCCGAATGCGCTGCCGATCGACCTTTTATTAAAGCGGCTTGATGAAATTCCTCTGTTACGCTCT
ATCAGCATTACGGGCGGCGAACCGATGCTTTCGCTGAAATCGGTAAAGGAATACGTCGTCCCGCTTTTGAAATATGCCCA
TGAACGCGGCGTGCGCACACAGATCAATTCAAACCTGACGCTTGATATCGGGCGCTACGAACGGATTATTCCCTATCTGG
ACGTTCTTCACATTTCTCACAATTGGGGAACGGTCGAGGACTTTGCCGACATCGGATTTGCGATGATGGAGAAGAAACCG
ACATTTGAACAGCGGGCGCGCTATTTTGACAAAATGATTGAAAACAGCCGCACGCTGGTCGAAGCAGGCGTAATGGTTTC
AGCGGAAACGATGCTGAACAAACGGACGCTGCCGCATATTGAACATATTCATCGGCAAATTACGGAAGAAATGAAATGCC
AGCGGCACGAAGTCCATCCGATGTATCCGAGTGATTTCGCCAGCGCGCTTGAATCACTCAGCCTGACGGACATGAGACAG
GCCATTCATCATCTGCTCGACATTCGCGATGAAGAGACATGGATGCTGTTCGGTACGCTCCCGTTTTACGCATGCAGCCC
TGATGAAGAAGATCAGAAGCTCCTCCGCCGCCTGCGGGAAGCGAGAAACGTTACGGTGCGAAACGACCCTGACGGCCGCT
CCCGCCTGAATGTCAACATTTTTGACGGAAATATCATTGTCACGGATTTCGGCGATACACCGCCGCTCGGCAATATTAAA
ACAGACAGCCTTCCTGAAGCATATGACAAGTGGAGACAGACGAAGCTGAGCAAAGAGCTGAACTGCCGCTGCACAAACGT
CCGGTGCCTCGGCCCGAACGTCCTTGTCAAAAACAGTTATTATCAGGACACAGATTTTTCATTACGAAAAGCCAGAGGTT
AA

Upstream 100 bases:

>100_bases
TTTTTCAATGGTTCCGCTACTTGCGATCTTGGCAGATCAGGTCTAAAATTAACAGTTGGCAGACGTTAGTATGCCCCATT
TATAAAGGAGTTAGATAGTC

Downstream 100 bases:

>100_bases
CAAAAGATGGAAACGACAATTACGGACATTTTGAAAAGCAAAGTGGTTGAGATCATCATCGTCGCTCTCGTGCTTTACGC
CGGTGTTTTTCTGATCAACC

Product: YfkA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTQNTTLRPITPEYDPWEAYMDVDQYGDMKLTNVEFTTTTLCNMRCEHCAVGYTLQPKDPNALPIDLLLKRLDEIPLLRS
ISITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDIGRYERIIPYLDVLHISHNWGTVEDFADIGFAMMEKKP
TFEQRARYFDKMIENSRTLVEAGVMVSAETMLNKRTLPHIEHIHRQITEEMKCQRHEVHPMYPSDFASALESLSLTDMRQ
AIHHLLDIRDEETWMLFGTLPFYACSPDEEDQKLLRRLREARNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIK
TDSLPEAYDKWRQTKLSKELNCRCTNVRCLGPNVLVKNSYYQDTDFSLRKARG

Sequences:

>Translated_373_residues
MTQNTTLRPITPEYDPWEAYMDVDQYGDMKLTNVEFTTTTLCNMRCEHCAVGYTLQPKDPNALPIDLLLKRLDEIPLLRS
ISITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDIGRYERIIPYLDVLHISHNWGTVEDFADIGFAMMEKKP
TFEQRARYFDKMIENSRTLVEAGVMVSAETMLNKRTLPHIEHIHRQITEEMKCQRHEVHPMYPSDFASALESLSLTDMRQ
AIHHLLDIRDEETWMLFGTLPFYACSPDEEDQKLLRRLREARNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIK
TDSLPEAYDKWRQTKLSKELNCRCTNVRCLGPNVLVKNSYYQDTDFSLRKARG
>Mature_372_residues
TQNTTLRPITPEYDPWEAYMDVDQYGDMKLTNVEFTTTTLCNMRCEHCAVGYTLQPKDPNALPIDLLLKRLDEIPLLRSI
SITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLTLDIGRYERIIPYLDVLHISHNWGTVEDFADIGFAMMEKKPT
FEQRARYFDKMIENSRTLVEAGVMVSAETMLNKRTLPHIEHIHRQITEEMKCQRHEVHPMYPSDFASALESLSLTDMRQA
IHHLLDIRDEETWMLFGTLPFYACSPDEEDQKLLRRLREARNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDTPPLGNIKT
DSLPEAYDKWRQTKLSKELNCRCTNVRCLGPNVLVKNSYYQDTDFSLRKARG

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197
- InterPro:   IPR014866 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08756 YfkB [H]

EC number: NA

Molecular weight: Translated: 43163; Mature: 43032

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQNTTLRPITPEYDPWEAYMDVDQYGDMKLTNVEFTTTTLCNMRCEHCAVGYTLQPKDP
CCCCCCCCCCCCCCCCHHHHCCHHHCCCEEEEEEEEEHHHHHHCCHHHEEECCEECCCCC
NALPIDLLLKRLDEIPLLRSISITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLT
CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
LDIGRYERIIPYLDVLHISHNWGTVEDFADIGFAMMEKKPTFEQRARYFDKMIENSRTLV
EECCCHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHEE
EAGVMVSAETMLNKRTLPHIEHIHRQITEEMKCQRHEVHPMYPSDFASALESLSLTDMRQ
HHCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHH
AIHHLLDIRDEETWMLFGTLPFYACSPDEEDQKLLRRLREARNVTVRNDPDGRSRLNVNI
HHHHHHCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEE
FDGNIIVTDFGDTPPLGNIKTDSLPEAYDKWRQTKLSKELNCRCTNVRCLGPNVLVKNSY
EECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCC
YQDTDFSLRKARG
CCCCCCCHHCCCC
>Mature Secondary Structure 
TQNTTLRPITPEYDPWEAYMDVDQYGDMKLTNVEFTTTTLCNMRCEHCAVGYTLQPKDP
CCCCCCCCCCCCCCCHHHHCCHHHCCCEEEEEEEEEHHHHHHCCHHHEEECCEECCCCC
NALPIDLLLKRLDEIPLLRSISITGGEPMLSLKSVKEYVVPLLKYAHERGVRTQINSNLT
CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
LDIGRYERIIPYLDVLHISHNWGTVEDFADIGFAMMEKKPTFEQRARYFDKMIENSRTLV
EECCCHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHEE
EAGVMVSAETMLNKRTLPHIEHIHRQITEEMKCQRHEVHPMYPSDFASALESLSLTDMRQ
HHCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHH
AIHHLLDIRDEETWMLFGTLPFYACSPDEEDQKLLRRLREARNVTVRNDPDGRSRLNVNI
HHHHHHCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEE
FDGNIIVTDFGDTPPLGNIKTDSLPEAYDKWRQTKLSKELNCRCTNVRCLGPNVLVKNSY
EECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCC
YQDTDFSLRKARG
CCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]