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The map label for this gene is sigV [H]

Identifier: 154685119

GI number: 154685119

Start: 639586

End: 640083

Strand: Reverse

Name: sigV [H]

Synonym: RBAM_006640

Alternate gene names: 154685119

Gene position: 640083-639586 (Counterclockwise)

Preceding gene: 154685120

Following gene: 154685118

Centisome position: 16.33

GC content: 43.78

Gene sequence:

>498_bases
ATGAAGAACGAAACAGCCAAAGCGTCGCTTGTGACGTGCATAACTGAGCGCAAGGAAGACTTTTACCGGCTGGCGTACAG
TTACGTAAAGAACAAGGATGACGCGTTAGATATTGTTCAGGAATCAATTCAAAAAGCGCTGACATCGGTCGAATCCGTCA
AAAACCCCGATGTGATCAAAAGCTGGTTTTATAAAATTTTAGTGCGCACAGCCATTGATTTTCTCCGCAAACAGAAAAAA
CTGAAAGTGATGGACGATGAAACGATCGAGTTTTTAAGCCGCGGAAAGGAAGATCACTACAAAGACACAGATCTTCACGA
AGCGCTTGATGACCTGCCGCATCAATATAAAACCATTATCATTCTGCGTTTCTTTGAAGACCTGAAATTAGAAGAAATCG
CAGACATCACGGGGGAAAACATCAACACCGTCAAAACACGCCTTTACAGGGGGCTGAAGCTCATGCGCATTCAGCTGACG
AAGGAGGATCTTTCTTAA

Upstream 100 bases:

>100_bases
AAAATGATCCCCTCTGCGCAAACTATTTTTCACCCTGTCCCGTCTATCCTTAGGCAGCAGCCTATGATACGTATTTTTAA
AAAAGGAGCCCTTTGAAGCA

Downstream 100 bases:

>100_bases
TGGAAAAGAGATTAGAACAATTAAGAGAAGAGTATAAAAGTGTGCCCATTCCTAAGGAACTGGACAGCATTGTCGAAAAA
GCCCTTCAGCAGAAACCGAA

Product: SigV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKNETAKASLVTCITERKEDFYRLAYSYVKNKDDALDIVQESIQKALTSVESVKNPDVIKSWFYKILVRTAIDFLRKQKK
LKVMDDETIEFLSRGKEDHYKDTDLHEALDDLPHQYKTIIILRFFEDLKLEEIADITGENINTVKTRLYRGLKLMRIQLT
KEDLS

Sequences:

>Translated_165_residues
MKNETAKASLVTCITERKEDFYRLAYSYVKNKDDALDIVQESIQKALTSVESVKNPDVIKSWFYKILVRTAIDFLRKQKK
LKVMDDETIEFLSRGKEDHYKDTDLHEALDDLPHQYKTIIILRFFEDLKLEEIADITGENINTVKTRLYRGLKLMRIQLT
KEDLS
>Mature_165_residues
MKNETAKASLVTCITERKEDFYRLAYSYVKNKDDALDIVQESIQKALTSVESVKNPDVIKSWFYKILVRTAIDFLRKQKK
LKVMDDETIEFLSRGKEDHYKDTDLHEALDDLPHQYKTIIILRFFEDLKLEEIADITGENINTVKTRLYRGLKLMRIQLT
KEDLS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19438; Mature: 19438

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNETAKASLVTCITERKEDFYRLAYSYVKNKDDALDIVQESIQKALTSVESVKNPDVIK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
SWFYKILVRTAIDFLRKQKKLKVMDDETIEFLSRGKEDHYKDTDLHEALDDLPHQYKTII
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHH
ILRFFEDLKLEEIADITGENINTVKTRLYRGLKLMRIQLTKEDLS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNETAKASLVTCITERKEDFYRLAYSYVKNKDDALDIVQESIQKALTSVESVKNPDVIK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
SWFYKILVRTAIDFLRKQKKLKVMDDETIEFLSRGKEDHYKDTDLHEALDDLPHQYKTII
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHH
ILRFFEDLKLEEIADITGENINTVKTRLYRGLKLMRIQLTKEDLS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]