| Definition | Bacillus amyloliquefaciens FZB42, complete genome. |
|---|---|
| Accession | NC_009725 |
| Length | 3,918,589 |
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The map label for this gene is yclH [H]
Identifier: 154684866
GI number: 154684866
Start: 395619
End: 396302
Strand: Reverse
Name: yclH [H]
Synonym: RBAM_003970
Alternate gene names: 154684866
Gene position: 396302-395619 (Counterclockwise)
Preceding gene: 154684867
Following gene: 154684855
Centisome position: 10.11
GC content: 48.54
Gene sequence:
>684_bases ATGAGCCTATTAACCTTTCAACAGACCGGCTACTGGTACCAAGACAAATCACAGCCGCTATTTCAGGATATAACGATCAG CTTTGAAAAAGGGAAGTTTTATACAATTGTCGGCGCCTCCGGAACGGGAAAAACAACGTTTCTGTCTCTGGCGGGCGGCC TTGACACACCTAAAGAGGGAAGCATCCTTTATAACGGAGAAGACATCTCCAAAATCGGATTAACCAAATTCAGAAATCAA TATGTCTCTATCGTCTTTCAATCTTATCATCTGATCCCGTATATGACGGCGCTCCAGAATGTCACAACGGCGATGGAGAT CACCGGCTCTAAGGAGAACAACAAAGATGCGTTCGCGCTCAGCATGCTGAAAAAAGTCGGCATCACCGAACAGCAGGCCC GTCAGCGGGTGCTGACATTAAGCGGCGGACAGCAGCAGCGCGTTTCAATTGCGCGGGCTTTCTGCTGTGACACGGATTTG ATTTGCGCGGACGAGCCGACGGGAAATCTCGACGAGGATACGTCAAAGGAAATCGTCCGGCTCTTTCAGGATCTGGCGCA TAAAGGCGGCAAATGCATCATCATGGTGACGCACGACGAACAAATTGCCAAAGTTTCTGATATCAATATCCGCTTATCAA GAGGAAGTTTCACAGTAAAAGAAAACGGCACGGCCGTTTCCTGA
Upstream 100 bases:
>100_bases TCGCAATTGCCGTCATCGCCACATTACTGCCGTCTGTATCAGTCATGCGGCTTCACCCTAAAACGATCCTGGCCAAGCAG GAATAAGAGGAGGCAGCATA
Downstream 100 bases:
>100_bases TACCGCGCCCCTGCCAGCGCAGACAGGGGCGCACCCTATATCCCCCTATTCAATAGAAGTGAACGTAAAAAGAGCGAGGG CTGCATCCCCTCGCTCTTTT
Product: YclH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MSLLTFQQTGYWYQDKSQPLFQDITISFEKGKFYTIVGASGTGKTTFLSLAGGLDTPKEGSILYNGEDISKIGLTKFRNQ YVSIVFQSYHLIPYMTALQNVTTAMEITGSKENNKDAFALSMLKKVGITEQQARQRVLTLSGGQQQRVSIARAFCCDTDL ICADEPTGNLDEDTSKEIVRLFQDLAHKGGKCIIMVTHDEQIAKVSDINIRLSRGSFTVKENGTAVS
Sequences:
>Translated_227_residues MSLLTFQQTGYWYQDKSQPLFQDITISFEKGKFYTIVGASGTGKTTFLSLAGGLDTPKEGSILYNGEDISKIGLTKFRNQ YVSIVFQSYHLIPYMTALQNVTTAMEITGSKENNKDAFALSMLKKVGITEQQARQRVLTLSGGQQQRVSIARAFCCDTDL ICADEPTGNLDEDTSKEIVRLFQDLAHKGGKCIIMVTHDEQIAKVSDINIRLSRGSFTVKENGTAVS >Mature_226_residues SLLTFQQTGYWYQDKSQPLFQDITISFEKGKFYTIVGASGTGKTTFLSLAGGLDTPKEGSILYNGEDISKIGLTKFRNQY VSIVFQSYHLIPYMTALQNVTTAMEITGSKENNKDAFALSMLKKVGITEQQARQRVLTLSGGQQQRVSIARAFCCDTDLI CADEPTGNLDEDTSKEIVRLFQDLAHKGGKCIIMVTHDEQIAKVSDINIRLSRGSFTVKENGTAVS
Specific function: Part Of The Abc Transporter Complex Lolcde Involved In The Translocation Of Mature Outer Membrane-Directed Lipoproteins, From The Inner Membrane To The Periplasmic Chaperone, Lola. Responsible For The Formation Of The Lola-Lipoprotein Complex In An ATP-De
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=236, Percent_Identity=28.8135593220339, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI255708477, Length=236, Percent_Identity=28.8135593220339, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI105990541, Length=186, Percent_Identity=28.494623655914, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI42741659, Length=230, Percent_Identity=28.695652173913, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI4505771, Length=230, Percent_Identity=28.2608695652174, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9961252, Length=230, Percent_Identity=28.2608695652174, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI21536376, Length=193, Percent_Identity=27.4611398963731, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI215820660, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI20143975, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46592956, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI46592915, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI156105685, Length=205, Percent_Identity=29.7560975609756, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI46592898, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI46592964, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI46592978, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI171184400, Length=225, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI46592971, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI42490749, Length=217, Percent_Identity=30.4147465437788, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9961250, Length=237, Percent_Identity=27.4261603375527, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI150417984, Length=181, Percent_Identity=28.1767955801105, Blast_Score=71, Evalue=6e-13, Organism=Homo sapiens, GI31657092, Length=210, Percent_Identity=24.7619047619048, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536378, Length=209, Percent_Identity=27.7511961722488, Blast_Score=69, Evalue=4e-12, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=38.9671361502347, Blast_Score=157, Evalue=8e-40, Organism=Escherichia coli, GI1787105, Length=207, Percent_Identity=33.8164251207729, Blast_Score=127, Evalue=9e-31, Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=36.0406091370558, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=34.1708542713568, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=33.6405529953917, Blast_Score=117, Evalue=4e-28, Organism=Escherichia coli, GI1789032, Length=181, Percent_Identity=34.8066298342541, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787029, Length=182, Percent_Identity=32.967032967033, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI1787370, Length=181, Percent_Identity=37.5690607734807, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1786398, Length=187, Percent_Identity=30.4812834224599, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=33.0357142857143, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1788761, Length=205, Percent_Identity=30.7317073170732, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1788644, Length=196, Percent_Identity=37.7551020408163, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=32.512315270936, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI87081791, Length=199, Percent_Identity=31.6582914572864, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1788225, Length=221, Percent_Identity=33.0316742081448, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1789962, Length=182, Percent_Identity=33.5164835164835, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787712, Length=177, Percent_Identity=33.8983050847458, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1786872, Length=206, Percent_Identity=32.5242718446602, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788450, Length=188, Percent_Identity=31.9148936170213, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1787089, Length=195, Percent_Identity=34.3589743589744, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=29.064039408867, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789963, Length=215, Percent_Identity=31.6279069767442, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1790467, Length=186, Percent_Identity=32.258064516129, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=28.2926829268293, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1787164, Length=180, Percent_Identity=31.6666666666667, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI48994883, Length=191, Percent_Identity=34.5549738219895, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1790534, Length=191, Percent_Identity=29.8429319371728, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787143, Length=179, Percent_Identity=32.9608938547486, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=28.0612244897959, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787112, Length=207, Percent_Identity=29.951690821256, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=28.1407035175879, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788210, Length=189, Percent_Identity=30.6878306878307, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790544, Length=196, Percent_Identity=29.5918367346939, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787500, Length=204, Percent_Identity=27.4509803921569, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788506, Length=193, Percent_Identity=26.4248704663212, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI48994997, Length=192, Percent_Identity=28.6458333333333, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787758, Length=184, Percent_Identity=28.2608695652174, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789586, Length=192, Percent_Identity=31.7708333333333, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787041, Length=205, Percent_Identity=26.8292682926829, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788897, Length=211, Percent_Identity=23.696682464455, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1787547, Length=224, Percent_Identity=24.5535714285714, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789991, Length=192, Percent_Identity=26.5625, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI145693107, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789890, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082268, Length=227, Percent_Identity=25.5506607929515, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786345, Length=208, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786319, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787759, Length=197, Percent_Identity=27.9187817258883, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790739, Length=221, Percent_Identity=25.7918552036199, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790525, Length=207, Percent_Identity=27.536231884058, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786803, Length=183, Percent_Identity=28.9617486338798, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789864, Length=201, Percent_Identity=22.8855721393035, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790190, Length=172, Percent_Identity=26.7441860465116, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI48995001, Length=203, Percent_Identity=25.615763546798, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790162, Length=201, Percent_Identity=27.363184079602, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788472, Length=207, Percent_Identity=23.1884057971014, Blast_Score=64, Evalue=9e-12, Organism=Caenorhabditis elegans, GI193208177, Length=230, Percent_Identity=29.1304347826087, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71992290, Length=225, Percent_Identity=25.3333333333333, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17533971, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202349, Length=217, Percent_Identity=29.9539170506912, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115535101, Length=232, Percent_Identity=25.4310344827586, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992285, Length=207, Percent_Identity=27.0531400966184, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996550, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=211, Percent_Identity=26.0663507109005, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17541710, Length=230, Percent_Identity=27.3913043478261, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=231, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533608, Length=182, Percent_Identity=28.021978021978, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17559834, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=230, Percent_Identity=24.7826086956522, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322640, Length=215, Percent_Identity=30.6976744186047, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=204, Percent_Identity=24.0196078431373, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI24666092, Length=177, Percent_Identity=26.5536723163842, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24648314, Length=176, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24582014, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582012, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI45551502, Length=228, Percent_Identity=28.5087719298246, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI45551501, Length=228, Percent_Identity=28.5087719298246, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI85816269, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580553, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI85724864, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580555, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357851, Length=228, Percent_Identity=28.5087719298246, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076684, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581617, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581615, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076682, Length=187, Percent_Identity=27.807486631016, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24666836, Length=205, Percent_Identity=27.3170731707317, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24653245, Length=235, Percent_Identity=27.2340425531915, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI281363262, Length=235, Percent_Identity=27.2340425531915, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI85726357, Length=212, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI17136662, Length=200, Percent_Identity=29, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25089; Mature: 24958
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLTFQQTGYWYQDKSQPLFQDITISFEKGKFYTIVGASGTGKTTFLSLAGGLDTPKEG CCEEEEECCCCEECCCCCCCEEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCCCCC SILYNGEDISKIGLTKFRNQYVSIVFQSYHLIPYMTALQNVTTAMEITGSKENNKDAFAL CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHH SMLKKVGITEQQARQRVLTLSGGQQQRVSIARAFCCDTDLICADEPTGNLDEDTSKEIVR HHHHHHCCCHHHHHCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHH LFQDLAHKGGKCIIMVTHDEQIAKVSDINIRLSRGSFTVKENGTAVS HHHHHHHCCCCEEEEEECCCHHEEEECEEEEEECCEEEEECCCCCCC >Mature Secondary Structure SLLTFQQTGYWYQDKSQPLFQDITISFEKGKFYTIVGASGTGKTTFLSLAGGLDTPKEG CEEEEECCCCEECCCCCCCEEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCCCCC SILYNGEDISKIGLTKFRNQYVSIVFQSYHLIPYMTALQNVTTAMEITGSKENNKDAFAL CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHH SMLKKVGITEQQARQRVLTLSGGQQQRVSIARAFCCDTDLICADEPTGNLDEDTSKEIVR HHHHHHCCCHHHHHCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHH LFQDLAHKGGKCIIMVTHDEQIAKVSDINIRLSRGSFTVKENGTAVS HHHHHHHCCCCEEEEEECCCHHEEEECEEEEEECCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]