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The map label for this gene is gerD [H]

Identifier: 154684674

GI number: 154684674

Start: 159346

End: 159903

Strand: Reverse

Name: gerD [H]

Synonym: RBAM_001810

Alternate gene names: 154684674

Gene position: 159903-159346 (Counterclockwise)

Preceding gene: 154684676

Following gene: 154684670

Centisome position: 4.08

GC content: 37.46

Gene sequence:

>558_bases
ATGTCAAAAGCCAAAACGCTATTGATAAGCTGTTTTGTTTTATTATCTGTAACAGCTTGTGCTCCAAAAGACCAAGCAGC
GGATATGGATTATGACCAGACTAAAAAAATGGTTGTTGATATATTAAAGACCGATGATGGAAAAAAGGCAATTAAGGAAA
TATTAAATGATGATGCGATGAATGAGGCATTGGTGATTGATCAAAATGCCGTTAAAGGCACAATAGAGAAAACCCTCACC
TCTAAAAAAGGGGCGGAGTTCTGGAAAACCATCTTTGAAGACTCAAAATTCGCCGAGAGCTTTGCAAAAACTCTTCAGCC
CGAGCATGAAAAAATCATAAAAAAACTGATGAAAGACCCTGATTATCAGAAAAGTTTTATGCAGATCATGCAGGACCCCG
GCATGGATAAAAAATACTATGAGCTGGTGAAAAGCCAAAAGTTCCGCAGTTACTTAGAAGATGTAATTACAGAGACACTT
TCCAGCCCGCTTTTCAAAAAGCAATTCGAGGATGAATTAAAAAAAGCAGCTTCAAGCTCTGAAAAAGAAAGCCAATAA

Upstream 100 bases:

>100_bases
TCATCCCCCTGACAATCGCGTTCAGCGATATTTTGTTATGTATAAATCCATTCCGATGAATCATATTAAAAATAAGTACA
AGTAAGGAAGGAGCTTATGC

Downstream 100 bases:

>100_bases
AAGGCCGGGCCGTGTTGATCCCGGCCCCTTTTTTATTCAGCTGTTTTTTCAATGACTTTCTGGGCGATCCCCATATAAAT
TTCCCCGATCGGATGACTTC

Product: GerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MSKAKTLLISCFVLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKEILNDDAMNEALVIDQNAVKGTIEKTLT
SKKGAEFWKTIFEDSKFAESFAKTLQPEHEKIIKKLMKDPDYQKSFMQIMQDPGMDKKYYELVKSQKFRSYLEDVITETL
SSPLFKKQFEDELKKAASSSEKESQ

Sequences:

>Translated_185_residues
MSKAKTLLISCFVLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKEILNDDAMNEALVIDQNAVKGTIEKTLT
SKKGAEFWKTIFEDSKFAESFAKTLQPEHEKIIKKLMKDPDYQKSFMQIMQDPGMDKKYYELVKSQKFRSYLEDVITETL
SSPLFKKQFEDELKKAASSSEKESQ
>Mature_184_residues
SKAKTLLISCFVLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKEILNDDAMNEALVIDQNAVKGTIEKTLTS
KKGAEFWKTIFEDSKFAESFAKTLQPEHEKIIKKLMKDPDYQKSFMQIMQDPGMDKKYYELVKSQKFRSYLEDVITETLS
SPLFKKQFEDELKKAASSSEKESQ

Specific function: May be involved in fructose recognition during germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21118; Mature: 20987

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAKTLLISCFVLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKEILNDDAM
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCHHHC
NEALVIDQNAVKGTIEKTLTSKKGAEFWKTIFEDSKFAESFAKTLQPEHEKIIKKLMKDP
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCC
DYQKSFMQIMQDPGMDKKYYELVKSQKFRSYLEDVITETLSSPLFKKQFEDELKKAASSS
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EKESQ
CCCCC
>Mature Secondary Structure 
SKAKTLLISCFVLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKEILNDDAM
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCHHHC
NEALVIDQNAVKGTIEKTLTSKKGAEFWKTIFEDSKFAESFAKTLQPEHEKIIKKLMKDP
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCC
DYQKSFMQIMQDPGMDKKYYELVKSQKFRSYLEDVITETLSSPLFKKQFEDELKKAASSS
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EKESQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2517635; 8969501; 9384377; 8576055; 7559346 [H]