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The map label for this gene is yfdE [H]

Identifier: 154248631

GI number: 154248631

Start: 5226781

End: 5227956

Strand: Direct

Name: yfdE [H]

Synonym: Xaut_4713

Alternate gene names: 154248631

Gene position: 5226781-5227956 (Clockwise)

Preceding gene: 154248630

Following gene: 154248636

Centisome position: 98.45

GC content: 70.49

Gene sequence:

>1176_bases
ATGTCCCCTCCCCTCGCCGGCCTTCGCGTCCTTGAACTTGCCCGCATCCTCGCAGGTCCCTGGTGCGGGCAGCTGCTCGC
CGATCTCGGCGCCGAGGTCATCAAGGTGGAGCGCCCCGGTGGCGGCGACGATACCCGCACCTGGGGCCCGCCCTTCCTGA
CGGGGGAGGACGGGGCCGATCTCGGCGCCGCCTATTTCCATGCCACCAATCGCGGCAAGCGCTCGGTGGCGGTGGATTTC
GAGACCGCGGAGGGACAGGAGACCATCCGCGCGCTGGCCCGCCAGAGCGATGTGGTCATCGAGAATTTCAAGGTGGGAGG
CCTCAAGAAATACGGCCTCGACTACGCGAGCCTGAAGGCGGAGAACCCGCGCCTCGTCTATTGCTCGGTCACCGGCTTCG
GCCAGGATGGCCCTTATGCGCCGCGCGCCGGCTACGACTTCCTGGTGCAGGGCATGGGCGGCATCATGGACCTCACCGGC
GCGCCGGAGGGCGAGCCGCAGAAGGTGGGGGTCGCCTTCGCCGACATCTTCACCGGCCTCTATGCCACCGTGGGCATCCT
CGCCGCCCTGCGCCGGCGGGAGGAGACCGGCACCGGCGGCCATGTGGACATGGCGCTGCTCGACACCCAGGTGGGCGTGC
TGGCCAACCAGGCCATGAACTACCTCACCTCCGGCAAGGCCCCCAGGCGCATGGGCAATGCCCATCCCAACATCGTGCCC
TATCAGGTCTTCCCCTGCGCGGACGGCTATTTCATCGCCGCCGTGGGCAATGACGGCCAGTTCGCCCGTTTCTGTGCCGT
GCTCGGCGCGCCGGAGCTGGCGCAGGAGGCCGATTTCGGCACCAACCCCGCTCGCGTCGCCCACCGCGCCGCGCTGGTGC
CGCAGCTGTCAGCGCTGACCGCCGCCTTCAGGCGCGACGACCTGCTCGCCGCGCTGGAGGCGAAGGGGGTGCCTGCCGGC
CCCATCAACACGGTGGCGCAGGTGTTCGACGATCCGCAAGTGAAGGCCCGCGGCCTGCGGGTGGACCTGAAGGAGGCCGG
CGGCGGCACCATCCCGGCGGTGGCGAGCCCTATCGTGCTCGACGGCGAGCGGCAGGTGGCCAAGGCCGCCAGCCCGCGCC
TCGGTGCCGATACGCAGGCCGTGCTGGCGGCGCTCAAGGCGCTGGCGAAGGGCTGA

Upstream 100 bases:

>100_bases
TTTCGTTCTCAGGGACGGAAGTCGGCAACAGCCGACCTCCGGATCAAGTCCGGCCATGACAATGGCTTTGGAACGACCCC
GCGCCAGAACGAGCCCCGCC

Downstream 100 bases:

>100_bases
GCCTCCAGCCGCCGCATTCATTTCCGGTGGCGTTCGACCTGCAAGACCGAGACGCAACAAGGAACCGGGACGCAAAAGGG
GACGGCGCACAGGCGCCGTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSPPLAGLRVLELARILAGPWCGQLLADLGAEVIKVERPGGGDDTRTWGPPFLTGEDGADLGAAYFHATNRGKRSVAVDF
ETAEGQETIRALARQSDVVIENFKVGGLKKYGLDYASLKAENPRLVYCSVTGFGQDGPYAPRAGYDFLVQGMGGIMDLTG
APEGEPQKVGVAFADIFTGLYATVGILAALRRREETGTGGHVDMALLDTQVGVLANQAMNYLTSGKAPRRMGNAHPNIVP
YQVFPCADGYFIAAVGNDGQFARFCAVLGAPELAQEADFGTNPARVAHRAALVPQLSALTAAFRRDDLLAALEAKGVPAG
PINTVAQVFDDPQVKARGLRVDLKEAGGGTIPAVASPIVLDGERQVAKAASPRLGADTQAVLAALKALAKG

Sequences:

>Translated_391_residues
MSPPLAGLRVLELARILAGPWCGQLLADLGAEVIKVERPGGGDDTRTWGPPFLTGEDGADLGAAYFHATNRGKRSVAVDF
ETAEGQETIRALARQSDVVIENFKVGGLKKYGLDYASLKAENPRLVYCSVTGFGQDGPYAPRAGYDFLVQGMGGIMDLTG
APEGEPQKVGVAFADIFTGLYATVGILAALRRREETGTGGHVDMALLDTQVGVLANQAMNYLTSGKAPRRMGNAHPNIVP
YQVFPCADGYFIAAVGNDGQFARFCAVLGAPELAQEADFGTNPARVAHRAALVPQLSALTAAFRRDDLLAALEAKGVPAG
PINTVAQVFDDPQVKARGLRVDLKEAGGGTIPAVASPIVLDGERQVAKAASPRLGADTQAVLAALKALAKG
>Mature_390_residues
SPPLAGLRVLELARILAGPWCGQLLADLGAEVIKVERPGGGDDTRTWGPPFLTGEDGADLGAAYFHATNRGKRSVAVDFE
TAEGQETIRALARQSDVVIENFKVGGLKKYGLDYASLKAENPRLVYCSVTGFGQDGPYAPRAGYDFLVQGMGGIMDLTGA
PEGEPQKVGVAFADIFTGLYATVGILAALRRREETGTGGHVDMALLDTQVGVLANQAMNYLTSGKAPRRMGNAHPNIVPY
QVFPCADGYFIAAVGNDGQFARFCAVLGAPELAQEADFGTNPARVAHRAALVPQLSALTAAFRRDDLLAALEAKGVPAGP
INTVAQVFDDPQVKARGLRVDLKEAGGGTIPAVASPIVLDGERQVAKAASPRLGADTQAVLAALKALAKG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=380, Percent_Identity=42.3684210526316, Blast_Score=304, Evalue=8e-83,
Organism=Homo sapiens, GI300863124, Length=346, Percent_Identity=43.3526011560694, Blast_Score=294, Evalue=8e-80,
Organism=Homo sapiens, GI13376042, Length=346, Percent_Identity=39.5953757225434, Blast_Score=256, Evalue=3e-68,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=37.3684210526316, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI42794625, Length=380, Percent_Identity=26.3157894736842, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266456254, Length=380, Percent_Identity=26.3157894736842, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=30.8880308880309, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=30.8880308880309, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458395, Length=183, Percent_Identity=32.7868852459016, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI42822893, Length=183, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI87082093, Length=359, Percent_Identity=38.1615598885794, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1788717, Length=408, Percent_Identity=31.1274509803922, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=332, Percent_Identity=26.8072289156627, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=222, Percent_Identity=28.3783783783784, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=44.7643979057592, Blast_Score=321, Evalue=4e-88,
Organism=Drosophila melanogaster, GI24585488, Length=206, Percent_Identity=31.5533980582524, Blast_Score=107, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40852; Mature: 40721

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPLAGLRVLELARILAGPWCGQLLADLGAEVIKVERPGGGDDTRTWGPPFLTGEDGAD
CCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
LGAAYFHATNRGKRSVAVDFETAEGQETIRALARQSDVVIENFKVGGLKKYGLDYASLKA
CCHHHEEECCCCCEEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCHHHCCCHHHCCC
ENPRLVYCSVTGFGQDGPYAPRAGYDFLVQGMGGIMDLTGAPEGEPQKVGVAFADIFTGL
CCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
YATVGILAALRRREETGTGGHVDMALLDTQVGVLANQAMNYLTSGKAPRRMGNAHPNIVP
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEE
YQVFPCADGYFIAAVGNDGQFARFCAVLGAPELAQEADFGTNPARVAHRAALVPQLSALT
EEEEECCCCEEEEEECCCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AAFRRDDLLAALEAKGVPAGPINTVAQVFDDPQVKARGLRVDLKEAGGGTIPAVASPIVL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCEEEHHHCCCCCCHHHCCCEEE
DGERQVAKAASPRLGADTQAVLAALKALAKG
CCCHHHHHHCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPPLAGLRVLELARILAGPWCGQLLADLGAEVIKVERPGGGDDTRTWGPPFLTGEDGAD
CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
LGAAYFHATNRGKRSVAVDFETAEGQETIRALARQSDVVIENFKVGGLKKYGLDYASLKA
CCHHHEEECCCCCEEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCHHHCCCHHHCCC
ENPRLVYCSVTGFGQDGPYAPRAGYDFLVQGMGGIMDLTGAPEGEPQKVGVAFADIFTGL
CCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
YATVGILAALRRREETGTGGHVDMALLDTQVGVLANQAMNYLTSGKAPRRMGNAHPNIVP
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEE
YQVFPCADGYFIAAVGNDGQFARFCAVLGAPELAQEADFGTNPARVAHRAALVPQLSALT
EEEEECCCCEEEEEECCCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AAFRRDDLLAALEAKGVPAGPINTVAQVFDDPQVKARGLRVDLKEAGGGTIPAVASPIVL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCEEEHHHCCCCCCHHHCCCEEE
DGERQVAKAASPRLGADTQAVLAALKALAKG
CCCHHHHHHCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]