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The map label for this gene is yubM [H]

Identifier: 154248499

GI number: 154248499

Start: 5062145

End: 5064208

Strand: Direct

Name: yubM [H]

Synonym: Xaut_4579

Alternate gene names: 154248499

Gene position: 5062145-5064208 (Clockwise)

Preceding gene: 154248498

Following gene: 154248500

Centisome position: 95.35

GC content: 67.83

Gene sequence:

>2064_bases
ATGGCCACGGCCGTTCAGAAGATCACCCTTTCGTCCTCCCGCGACATCCCTTTCAACAAGCTGGTGCTGAGTCAGGCCAA
CGTCCGCCGGGTGAAGGCGGGCGTCTCCATCGAGGAACTCGCCGAGGACATCGCCCGGCGCGGCCTGCTCCAGGGCCTCA
ATGTCCGAGCCGTGGTCGATCCCGACGGCGTCGAGACCGGCATGTATGAGATCCCGGCCGGCGGGCGGCGCTATCGGGCG
CTGGAGCTGCTGGTGAAGCGCAAGCGCCTCGCCAGGACGGCCCCGGTGCCATGCATTGTCCGTGAGGGCGGCATCGCCGA
GGAGGATTCCCTCGCCGAGAATGTCCAGCGCGCGCCGCTCCATCCCCTCGACCAGTTCCGTGCCTTTCTCGCTCTGCGGG
AGAAGGGCCAGTCCGAGGAGGAGATCGCCGCCGCCTTCTTCGTCTCGGTCGCGGTGGTGAAGCAGCGGCTGAAGCTCGCC
TCGCTCTCTCCGACGCTCCTCGACACCTATGCCGAGGATGGCCTCACCCTCGACCAGCTCATGGCCTTCACCGTATCGGG
CGACCATGAACGGCAGGAGCAGGTGCTGGAGCGTCTCGCCCAAGCTTACGACAAGCAGCCCTATGTCATCCGGCGCATGC
TGACGGAGGGCGCGGTGCGGGCATCCGACAAGCGGGCCCGCTTCATCGGCATCGAGGCCTACGAGATGGCCGGCGGCACG
GTGCTGCGCGACCTGTTCCAGGGCGATGACGGTGGCTGGCTGCAGGATGTGCCCCTCGTCGACCGGATGGTGGCCGAGAA
GCTCGTCGCCGAGGCCGACGTGATCCGGAGCGAGGGTTGGAAGTGGATCGAGGTCGCGCCGGACTTCGCCTATGGCCACA
CCTATGGCCTACGCCAATTGCGGGGCGAGCCCATGCATTTGACCGAAGCGGAGGAGGCTGCGCGGGAGGCAGCCCAGGGG
GAATACGATCGTCTGTCCGAAGAACATGCCGATGTCGACGAGCTTCCCGAAGAGGTCGACGCGCGGCTCGGGGCACTCGA
GGCGATGCTGGAGGCCTTCGAAGCGCGTCCTCTCGCGTTCGATCCGGCGGAGGTCGCCCGGGCCGGCGCCTTCGTCAGCA
TCGCACAGGATGGAAAGCTCCGGGTGGAACGGGGTTTCGTCCGCCCGGAGGACGAGGTGCCGGTCGAGGAGGACCATGAC
CCTTCCATCGAGACCGACGGTGCCAACCTCGTGGCCTCATCCCCTCGGCAGGAGGCGGCAGCAGGCGATGCTCCTGGCGA
GCCCGAGGAGGAGGACGGCCTCACCCCCATCTCCGACCGGCTGCTCACGGAGCTGACCACCCACCGCACCCTCGGCCTGC
GCCATTCGCTGGGCGAGCAGCCTGACGTCGCCTTCCTTGCCGCGGTCCATGCCCTGACGCTGAAAGCTTTCTACGCCTAT
GGCTCGGACAGCTGCCTTGAGCTCGATCTCAAGAGCGTCTCGTTCAATGCCCAGGCGCCGGGCCTCAATGACAGCGTCTC
CGCCGAGTCCATTCGTGTCCGGCATGAGAGCTGGGCCAAGGCTCTGCCGAAGGAGCCGGGCACGCTCTGGGACACCTTGA
GCGGGTGGGACCACGACAGCCGGGCCGCACTGTTCGCCCATGTGGTGAGCCTCTCGGTCAATGCGGTGCATGAGGCCTGG
AACCGCCGTCCCCGCGCCTTCGCCCATGCCGATAGGCTGGCGCAGGCGGTGTCGCTCGACATGGCAGCCGTCGGATGGAA
GCCCACGGTGGACACCTTCCTCGGCAGGGTCACCAAGGCCCGCATCCTGCAGGCGGTGACCGAGGCCAAGGGGGAGCGCC
CGGCCGAGCGGATCGCCCACCTCAAGAAGGGCGACATGGCCCGGGAGGCCGAGACCCTCCTCGCCGACAGCGGCTGGCTC
CCGGAGGCGCTGCGGACCCAGCCCTTGGACACCGTCGGCGAGGAAACGGCGGAGACCGACGGCGAAACGGCCATGGCCGA
CAGCGAAGACCTCGCCGACACTGAGGAGCCCGAAGCGATCTCCTCCTCGATCGCTGCCGAATAA

Upstream 100 bases:

>100_bases
CTGCGGCGCTGCCCTCAGAGGAAGAGGGCGGCGCCGTCCTTCGTGACGGGTTGGAGGCCAGAGAGAGGTTCTCTGGCCGC
CCGTCGCGGAGAAATATCCC

Downstream 100 bases:

>100_bases
TCCTCCCCGGGCAACCTGGCCCGCCGTCTGTGGCTCCGCGATGCCCCCTATCGCGTGGCCCGGACGGCGGGCCATTTTCT
TGGAGCGTCCCCATGACGGA

Product: parB-like partition protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 686

Protein sequence:

>687_residues
MATAVQKITLSSSRDIPFNKLVLSQANVRRVKAGVSIEELAEDIARRGLLQGLNVRAVVDPDGVETGMYEIPAGGRRYRA
LELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEIAAAFFVSVAVVKQRLKLA
SLSPTLLDTYAEDGLTLDQLMAFTVSGDHERQEQVLERLAQAYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYEMAGGT
VLRDLFQGDDGGWLQDVPLVDRMVAEKLVAEADVIRSEGWKWIEVAPDFAYGHTYGLRQLRGEPMHLTEAEEAAREAAQG
EYDRLSEEHADVDELPEEVDARLGALEAMLEAFEARPLAFDPAEVARAGAFVSIAQDGKLRVERGFVRPEDEVPVEEDHD
PSIETDGANLVASSPRQEAAAGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHSLGEQPDVAFLAAVHALTLKAFYAY
GSDSCLELDLKSVSFNAQAPGLNDSVSAESIRVRHESWAKALPKEPGTLWDTLSGWDHDSRAALFAHVVSLSVNAVHEAW
NRRPRAFAHADRLAQAVSLDMAAVGWKPTVDTFLGRVTKARILQAVTEAKGERPAERIAHLKKGDMAREAETLLADSGWL
PEALRTQPLDTVGEETAETDGETAMADSEDLADTEEPEAISSSIAAE

Sequences:

>Translated_687_residues
MATAVQKITLSSSRDIPFNKLVLSQANVRRVKAGVSIEELAEDIARRGLLQGLNVRAVVDPDGVETGMYEIPAGGRRYRA
LELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEIAAAFFVSVAVVKQRLKLA
SLSPTLLDTYAEDGLTLDQLMAFTVSGDHERQEQVLERLAQAYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYEMAGGT
VLRDLFQGDDGGWLQDVPLVDRMVAEKLVAEADVIRSEGWKWIEVAPDFAYGHTYGLRQLRGEPMHLTEAEEAAREAAQG
EYDRLSEEHADVDELPEEVDARLGALEAMLEAFEARPLAFDPAEVARAGAFVSIAQDGKLRVERGFVRPEDEVPVEEDHD
PSIETDGANLVASSPRQEAAAGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHSLGEQPDVAFLAAVHALTLKAFYAY
GSDSCLELDLKSVSFNAQAPGLNDSVSAESIRVRHESWAKALPKEPGTLWDTLSGWDHDSRAALFAHVVSLSVNAVHEAW
NRRPRAFAHADRLAQAVSLDMAAVGWKPTVDTFLGRVTKARILQAVTEAKGERPAERIAHLKKGDMAREAETLLADSGWL
PEALRTQPLDTVGEETAETDGETAMADSEDLADTEEPEAISSSIAAE
>Mature_686_residues
ATAVQKITLSSSRDIPFNKLVLSQANVRRVKAGVSIEELAEDIARRGLLQGLNVRAVVDPDGVETGMYEIPAGGRRYRAL
ELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPLHPLDQFRAFLALREKGQSEEEIAAAFFVSVAVVKQRLKLAS
LSPTLLDTYAEDGLTLDQLMAFTVSGDHERQEQVLERLAQAYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYEMAGGTV
LRDLFQGDDGGWLQDVPLVDRMVAEKLVAEADVIRSEGWKWIEVAPDFAYGHTYGLRQLRGEPMHLTEAEEAAREAAQGE
YDRLSEEHADVDELPEEVDARLGALEAMLEAFEARPLAFDPAEVARAGAFVSIAQDGKLRVERGFVRPEDEVPVEEDHDP
SIETDGANLVASSPRQEAAAGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHSLGEQPDVAFLAAVHALTLKAFYAYG
SDSCLELDLKSVSFNAQAPGLNDSVSAESIRVRHESWAKALPKEPGTLWDTLSGWDHDSRAALFAHVVSLSVNAVHEAWN
RRPRAFAHADRLAQAVSLDMAAVGWKPTVDTFLGRVTKARILQAVTEAKGERPAERIAHLKKGDMAREAETLLADSGWLP
EALRTQPLDTVGEETAETDGETAMADSEDLADTEEPEAISSSIAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 75191; Mature: 75060

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAVQKITLSSSRDIPFNKLVLSQANVRRVKAGVSIEELAEDIARRGLLQGLNVRAVVD
CCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEC
PDGVETGMYEIPAGGRRYRALELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPL
CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC
HPLDQFRAFLALREKGQSEEEIAAAFFVSVAVVKQRLKLASLSPTLLDTYAEDGLTLDQL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
MAFTVSGDHERQEQVLERLAQAYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYEMAGGT
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCHH
VLRDLFQGDDGGWLQDVPLVDRMVAEKLVAEADVIRSEGWKWIEVAPDFAYGHTYGLRQL
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
RGEPMHLTEAEEAAREAAQGEYDRLSEEHADVDELPEEVDARLGALEAMLEAFEARPLAF
CCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DPAEVARAGAFVSIAQDGKLRVERGFVRPEDEVPVEEDHDPSIETDGANLVASSPRQEAA
CHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHC
AGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHSLGEQPDVAFLAAVHALTLKAFYAY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GSDSCLELDLKSVSFNAQAPGLNDSVSAESIRVRHESWAKALPKEPGTLWDTLSGWDHDS
CCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCH
RAALFAHVVSLSVNAVHEAWNRRPRAFAHADRLAQAVSLDMAAVGWKPTVDTFLGRVTKA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RILQAVTEAKGERPAERIAHLKKGDMAREAETLLADSGWLPEALRTQPLDTVGEETAETD
HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHCCHHHCCC
GETAMADSEDLADTEEPEAISSSIAAE
CCCCCCCCHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
ATAVQKITLSSSRDIPFNKLVLSQANVRRVKAGVSIEELAEDIARRGLLQGLNVRAVVD
CCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEC
PDGVETGMYEIPAGGRRYRALELLVKRKRLARTAPVPCIVREGGIAEEDSLAENVQRAPL
CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC
HPLDQFRAFLALREKGQSEEEIAAAFFVSVAVVKQRLKLASLSPTLLDTYAEDGLTLDQL
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
MAFTVSGDHERQEQVLERLAQAYDKQPYVIRRMLTEGAVRASDKRARFIGIEAYEMAGGT
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCHH
VLRDLFQGDDGGWLQDVPLVDRMVAEKLVAEADVIRSEGWKWIEVAPDFAYGHTYGLRQL
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
RGEPMHLTEAEEAAREAAQGEYDRLSEEHADVDELPEEVDARLGALEAMLEAFEARPLAF
CCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DPAEVARAGAFVSIAQDGKLRVERGFVRPEDEVPVEEDHDPSIETDGANLVASSPRQEAA
CHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHC
AGDAPGEPEEEDGLTPISDRLLTELTTHRTLGLRHSLGEQPDVAFLAAVHALTLKAFYAY
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GSDSCLELDLKSVSFNAQAPGLNDSVSAESIRVRHESWAKALPKEPGTLWDTLSGWDHDS
CCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCH
RAALFAHVVSLSVNAVHEAWNRRPRAFAHADRLAQAVSLDMAAVGWKPTVDTFLGRVTKA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RILQAVTEAKGERPAERIAHLKKGDMAREAETLLADSGWLPEALRTQPLDTVGEETAETD
HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHCCHHHCCC
GETAMADSEDLADTEEPEAISSSIAAE
CCCCCCCCHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]