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The map label for this gene is sufD [H]

Identifier: 154248387

GI number: 154248387

Start: 4957623

End: 4958963

Strand: Reverse

Name: sufD [H]

Synonym: Xaut_4467

Alternate gene names: 154248387

Gene position: 4958963-4957623 (Counterclockwise)

Preceding gene: 154248388

Following gene: 154248386

Centisome position: 93.41

GC content: 70.69

Gene sequence:

>1341_bases
ATGAACATTCCCGTCCGTCCCGCCCGCACACCGGCCGAAGACGCCATCGCCGCCACGCTCCAGGCCCGGCTCGCCGTCGC
GGCCGGGCAGGGGGACCTTGACGGGCGTCTCGGCGAGCTGAGCGCCGATGCGCTTGAGGCCTTCCGCGCCCACGGCCTGC
CCAACCGGCGCGTCGAGGAGTGGAAATATACCGACCTGCGCGCTGCGGTGCGCGACTTCCCCCCGCTCGCCGGCTCCCCC
GGCACCGCGGCGGAGGCAGAGGCCGCCTCGCAGACGCTCGACGTGCCCCATGCGGCGCGCCTCCTGTTCGTGAGCGGGGC
GCTGGCGCGCGGCGCCTCCGACTTCGCCGGCCTGCCCGCCGGGGTCAGCGCCCTGCCGCTTGATGCGGCCAAGGCGGCGC
ACGATCCGCTGGTCGACCGCATCGGCTCGCTCCAGCCGGACCGCTATGACGGCGCGCTGGCGCTGAACACCGGCTTCCTC
GGCGAGGGGCTGGTGATGAAGGTGGATGCCGGCACCAGGGCTGCAAAGCCGGTGCATCTGGCCTACGTCTTCCCCGCCGA
GGAAGCTGTCGCCGGCTTCACCCGCACCGTGGTGGTGGTGGGCGACGGCGCCGAGCTGACGCTGGTGGAAAGCTTCACCG
GCCGCGAGGGCGTGGCCTACCAGGCCAACCACGCGATGGAACTGGTGGTGGGCGATGGCGCCACCGTCAATCTGGTGCGG
CTGCAGGAAGAGGGCGCGTCCGCGCTGCATCTGGGCACGCTCATGGTGGAGCTGGGCCGCGCGGCGAAGCTCAACGTGTT
CTCGCTGGTGCAGGGCGCGGCGCTGTCGCGCTATTCCGTCTACGGCCGCTTCCAGGGCACCGGGACAAATCTGGGGGTGC
GGGGCGCCACCCTGCTGAAGGGCCGCCAGCACGCCGACACCACCATGTTCATCGACCATGCGGTGGCGGGCTGCGAGAGC
CGGGAGCTGTTCAAGACCGTGCTCTCGGACGAGGCCCACGGCGTGTTCCAGGGCAAGATCGTGGTGCGGCGCGATGCCCA
GAAGACGGACGGGCGCATGATGAGCCAGTCTCTGCTTCTGAGCGACGGCGCCGAGATGGACAACAAGCCCGAGCTTGAGA
TCTTCGCCGACGACGTGCAGTGCGGCCACGGCGCCACGGTGGGCACGCTGGACGACAAGATGCTGTTCTACCTGCGCTCG
CGCGGCCTGCCGCTGAAGGAGGCCGAGCGCCTGCTGATCCAGGCCTTCGTGGGCGAGGCCGTGGAATTTGTGGAGGACGA
GGCCCTTCGGGAGATCCTCATCGCCCGCATGGTGGCTTGGCTGGAGAAACGGGCGGCCTGA

Upstream 100 bases:

>100_bases
ACAAGGGCCGCATCGTCCGCTCCGGCGGCGCCGAGCTGGCGCTGGAGCTGGAGGAATCCGGCTATGCCGCCTACGGGCAG
GATGCGGCGTGAGCGCGGCC

Downstream 100 bases:

>100_bases
AGGGCCTCTCCCGTTGTGTTCTCTCCCTCTCCCGCCTGCGGGAGAGGGCTTAGCTCGCGATTTCACGAGGACAGGATTGC
CATGAACACCGCGTCTTCCA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MNIPVRPARTPAEDAIAATLQARLAVAAGQGDLDGRLGELSADALEAFRAHGLPNRRVEEWKYTDLRAAVRDFPPLAGSP
GTAAEAEAASQTLDVPHAARLLFVSGALARGASDFAGLPAGVSALPLDAAKAAHDPLVDRIGSLQPDRYDGALALNTGFL
GEGLVMKVDAGTRAAKPVHLAYVFPAEEAVAGFTRTVVVVGDGAELTLVESFTGREGVAYQANHAMELVVGDGATVNLVR
LQEEGASALHLGTLMVELGRAAKLNVFSLVQGAALSRYSVYGRFQGTGTNLGVRGATLLKGRQHADTTMFIDHAVAGCES
RELFKTVLSDEAHGVFQGKIVVRRDAQKTDGRMMSQSLLLSDGAEMDNKPELEIFADDVQCGHGATVGTLDDKMLFYLRS
RGLPLKEAERLLIQAFVGEAVEFVEDEALREILIARMVAWLEKRAA

Sequences:

>Translated_446_residues
MNIPVRPARTPAEDAIAATLQARLAVAAGQGDLDGRLGELSADALEAFRAHGLPNRRVEEWKYTDLRAAVRDFPPLAGSP
GTAAEAEAASQTLDVPHAARLLFVSGALARGASDFAGLPAGVSALPLDAAKAAHDPLVDRIGSLQPDRYDGALALNTGFL
GEGLVMKVDAGTRAAKPVHLAYVFPAEEAVAGFTRTVVVVGDGAELTLVESFTGREGVAYQANHAMELVVGDGATVNLVR
LQEEGASALHLGTLMVELGRAAKLNVFSLVQGAALSRYSVYGRFQGTGTNLGVRGATLLKGRQHADTTMFIDHAVAGCES
RELFKTVLSDEAHGVFQGKIVVRRDAQKTDGRMMSQSLLLSDGAEMDNKPELEIFADDVQCGHGATVGTLDDKMLFYLRS
RGLPLKEAERLLIQAFVGEAVEFVEDEALREILIARMVAWLEKRAA
>Mature_446_residues
MNIPVRPARTPAEDAIAATLQARLAVAAGQGDLDGRLGELSADALEAFRAHGLPNRRVEEWKYTDLRAAVRDFPPLAGSP
GTAAEAEAASQTLDVPHAARLLFVSGALARGASDFAGLPAGVSALPLDAAKAAHDPLVDRIGSLQPDRYDGALALNTGFL
GEGLVMKVDAGTRAAKPVHLAYVFPAEEAVAGFTRTVVVVGDGAELTLVESFTGREGVAYQANHAMELVVGDGATVNLVR
LQEEGASALHLGTLMVELGRAAKLNVFSLVQGAALSRYSVYGRFQGTGTNLGVRGATLLKGRQHADTTMFIDHAVAGCES
RELFKTVLSDEAHGVFQGKIVVRRDAQKTDGRMMSQSLLLSDGAEMDNKPELEIFADDVQCGHGATVGTLDDKMLFYLRS
RGLPLKEAERLLIQAFVGEAVEFVEDEALREILIARMVAWLEKRAA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=394, Percent_Identity=32.741116751269, Blast_Score=182, Evalue=6e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47347; Mature: 47347

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPVRPARTPAEDAIAATLQARLAVAAGQGDLDGRLGELSADALEAFRAHGLPNRRVEE
CCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHH
WKYTDLRAAVRDFPPLAGSPGTAAEAEAASQTLDVPHAARLLFVSGALARGASDFAGLPA
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCCC
GVSALPLDAAKAAHDPLVDRIGSLQPDRYDGALALNTGFLGEGLVMKVDAGTRAAKPVHL
CCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEE
AYVFPAEEAVAGFTRTVVVVGDGAELTLVESFTGREGVAYQANHAMELVVGDGATVNLVR
EEEECHHHHHCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCEEEEEECCCCEEEEEE
LQEEGASALHLGTLMVELGRAAKLNVFSLVQGAALSRYSVYGRFQGTGTNLGVRGATLLK
EECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEC
GRQHADTTMFIDHAVAGCESRELFKTVLSDEAHGVFQGKIVVRRDAQKTDGRMMSQSLLL
CCCCCCCEEEEHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
SDGAEMDNKPELEIFADDVQCGHGATVGTLDDKMLFYLRSRGLPLKEAERLLIQAFVGEA
CCCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VEFVEDEALREILIARMVAWLEKRAA
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIPVRPARTPAEDAIAATLQARLAVAAGQGDLDGRLGELSADALEAFRAHGLPNRRVEE
CCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHH
WKYTDLRAAVRDFPPLAGSPGTAAEAEAASQTLDVPHAARLLFVSGALARGASDFAGLPA
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCCC
GVSALPLDAAKAAHDPLVDRIGSLQPDRYDGALALNTGFLGEGLVMKVDAGTRAAKPVHL
CCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEE
AYVFPAEEAVAGFTRTVVVVGDGAELTLVESFTGREGVAYQANHAMELVVGDGATVNLVR
EEEECHHHHHCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCEEEEEECCCCEEEEEE
LQEEGASALHLGTLMVELGRAAKLNVFSLVQGAALSRYSVYGRFQGTGTNLGVRGATLLK
EECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEC
GRQHADTTMFIDHAVAGCESRELFKTVLSDEAHGVFQGKIVVRRDAQKTDGRMMSQSLLL
CCCCCCCEEEEHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH
SDGAEMDNKPELEIFADDVQCGHGATVGTLDDKMLFYLRSRGLPLKEAERLLIQAFVGEA
CCCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VEFVEDEALREILIARMVAWLEKRAA
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]