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The map label for this gene is ydcN [H]

Identifier: 154248374

GI number: 154248374

Start: 4945818

End: 4946429

Strand: Direct

Name: ydcN [H]

Synonym: Xaut_4454

Alternate gene names: 154248374

Gene position: 4945818-4946429 (Clockwise)

Preceding gene: 154248373

Following gene: 154248378

Centisome position: 93.16

GC content: 67.65

Gene sequence:

>612_bases
ATGGCAGTCAAGGAGCGCGGGAACACCCTCGAGACCGGCGCGCAGGTCATCACCGGCCAGCTCGGCAAGACCATCCAGCG
CCTGCGCAAGGCCTATAACCTGTCCCTGTCCGACCTCGCCGAGCAGTCGGGCGTGGCGAAATCCATCATCAGCCAGATCG
AGCGCAACGAGACCAACCCGACGCTCGCCACCGTGTGGCGCCTGTCGCAGGCGCTGGACATGACGGTGGAGCGGGTGCTC
GCCTCCTCCGACGACGCCCCCTTCGTGGAGAAGCTGACCCGCGCCGACACCCCCATCCTGCTGTCGGAGGACGGGCTGGT
GCGGCTCTCCATCATCGGCTGGATCAAGACGGTGGAGTGGCTGCAATATTACGATATGGACGCCGCTCCCGGCGGCGAAC
TGGATTCCGACGGCCACCAGCGCGGCTCGGTGGAATGCCTCACCGTGCTCAAGGGCACGCTGGAGGTGGAGGTGGGCGGC
GTCATCGAGACGGTGAAGGAGGGCGAGACGGTGCGCTATCGCTGCGACCGCCGCCACGTCATCCGCAACCGCACCGACGC
CCCCGCCCGCGCCTTCATGGTGTGCCTGCTGAAGGCCGCCGTGCTGGAGTGA

Upstream 100 bases:

>100_bases
GCCCATCACCTTTTCCGTGCAGGCGCCGCTTCCCTCGCGCGGCTTTGCTGAGTATCGTCCGGCTCAGCGAACGTTCGTTC
GGCATTAAGGATCGCGGGGC

Downstream 100 bases:

>100_bases
TGGACCTGCGTTGAGGCGCGCGGCAGCCGGGATCGGCGCCACCCCTCTCCCGCTTGTGGGGGGGAGATTGCTTCCAACCA
TCGTCATGCCCGGGCTTGAC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAVKERGNTLETGAQVITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDMTVERVL
ASSDDAPFVEKLTRADTPILLSEDGLVRLSIIGWIKTVEWLQYYDMDAAPGGELDSDGHQRGSVECLTVLKGTLEVEVGG
VIETVKEGETVRYRCDRRHVIRNRTDAPARAFMVCLLKAAVLE

Sequences:

>Translated_203_residues
MAVKERGNTLETGAQVITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDMTVERVL
ASSDDAPFVEKLTRADTPILLSEDGLVRLSIIGWIKTVEWLQYYDMDAAPGGELDSDGHQRGSVECLTVLKGTLEVEVGG
VIETVKEGETVRYRCDRRHVIRNRTDAPARAFMVCLLKAAVLE
>Mature_202_residues
AVKERGNTLETGAQVITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDMTVERVLA
SSDDAPFVEKLTRADTPILLSEDGLVRLSIIGWIKTVEWLQYYDMDAAPGGELDSDGHQRGSVECLTVLKGTLEVEVGGV
IETVKEGETVRYRCDRRHVIRNRTDAPARAFMVCLLKAAVLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=165, Percent_Identity=30.3030303030303, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22400; Mature: 22269

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKERGNTLETGAQVITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCC
TLATVWRLSQALDMTVERVLASSDDAPFVEKLTRADTPILLSEDGLVRLSIIGWIKTVEW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHHH
LQYYDMDAAPGGELDSDGHQRGSVECLTVLKGTLEVEVGGVIETVKEGETVRYRCDRRHV
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECHHHHHHHCCCEEEEHHHHHHH
IRNRTDAPARAFMVCLLKAAVLE
HHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVKERGNTLETGAQVITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCC
TLATVWRLSQALDMTVERVLASSDDAPFVEKLTRADTPILLSEDGLVRLSIIGWIKTVEW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHHH
LQYYDMDAAPGGELDSDGHQRGSVECLTVLKGTLEVEVGGVIETVKEGETVRYRCDRRHV
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECHHHHHHHCCCEEEEHHHHHHH
IRNRTDAPARAFMVCLLKAAVLE
HHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]