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The map label for this gene is ligD

Identifier: 154248285

GI number: 154248285

Start: 4836935

End: 4839595

Strand: Reverse

Name: ligD

Synonym: Xaut_4365

Alternate gene names: 154248285

Gene position: 4839595-4836935 (Counterclockwise)

Preceding gene: 154248286

Following gene: 154248280

Centisome position: 91.16

GC content: 66.7

Gene sequence:

>2661_bases
ATGGCGACGGACAAGCTCTCTACCTACAAGGCGAAGCGCGATTTCCAACTGACACAGGAGCCGAGTGGCGGCGCGACAGC
GAGCGCCTCGAACCGCCGCCGCTTCGTCATCCAGAAGCATGACGCCACGCGGTTGCACTACGATCTCCGACTGGAACTCG
ACGGCGTCTTCAAGTCCTGGGCGGTGACCCGCGGTCCTTCCCTCGACCCCCACGACAAGCGCCTCGCCGTGGAAGTGGAA
GATCATCCGCTCGACTATGGCGACTTTGAAGGGACGATCCCCAAGGGCCAATACGGCGGCGGCACGGTCATGCTCTGGGA
CCGGGGCTACTGGGAGCCGGAAGGCAAGATGAGCCCCGAGCAGGCGTTGGCGCAGGGCGATCTCAAGTTCACCCTCGACG
GGGAGCGGCTGCATGGCAGCTTCGTGCTGGTTCGCATGGCCAATGACCGCGACCGGGGCAAGCGCACAAACTGGCTCCTG
ATGAAGCATCGCGACGCATTCGCGGTCGCGGCGAACGGCGCTGCGATCCTCGACGACTACGACACGTCCGTCGCGTCGGG
CCGCACCATGGCGGCCATCGCCACGGGAAAGGGGCGCAAGCCCAGCGTCTTCATGGTGCAGGGAGGCAAGGTTGAGTCCG
ATGCGGTCTGGGACAGTCGCACAGGCCTCGCGGCCGAGGCGCGCAAGGCGCCGGCACGGCGAAGCAAGACGCCGGACAAG
ATCGCGACCGCCGATCTCCCCGATTTCATCGCCCCGCAGCTGTGCCAGACCGTGGAGCGCCCGCCTTCTGCGGCCGGTTG
GCTTCACGAAATCAAGTTTGACGGCTACCGCGTCCAGATGCGGGTGCGTGACGGCAAGGTGACCTTGAAGACCCGCAAGG
GTCTCGATTGGACCGCAAGATTTGCGGCCATCGCGCGAGCCGCCGGCAAGCTGCCGGACGCGATCATTGATGGCGAGATC
TGCGCCCTGGACAACAACGGCGCCCCGGATTTCGCGGCGATTCAGGCAGCCCTTTCCGAGGGCAAGACCGATGGACTCGT
CTATTTCGCCTTCGACCTCCTGTTCGAAGGGGGCGAGGATCTGCGGTCCTTGCCACTGGCCGAGCGCAAGGGTCGATTGC
AGCAGTTCCTGATCGGTGCCGGCGAGGATGCCCGGCTGCGGTTCGTCGAGCATTTCGACACCGGCGGCGAGGCGGTGCTG
CGCTCGGCCTGCCGCCTCTCGCTTGAGGGCATCGTGTCGAAGCGGGCGGATGCGCCCTACGTCTCCGGGCGAACGGACAC
CTGGGCAAAGTCCAAGTGCCGCGCGGGACATGAGGTGGTCATCGGTGGCTACGCGACCACCGCCGGAAAATTCCGTTCGC
TCCTCGTTGGCGTCCACCGTGGCGACAGCTTCGTCTATGTGGGGCGCGTCGGGACGGGGTACAGCGCGGCGAAGGTCAGG
GGCCTCCTGCCGAAACTTCAGGCGGTCAAGAGGGCGAAATCGCCCTTCACCGGCATCTGCGCGCCGAAGCAGGAGCCCGG
CGTGGTCTGGCTCAAGCCCGAACTTGTCGCCGAGATCGAGTTCGCCGGTTGGACATCCGACGGCCTCGTCCGCCAGGCCT
CTTTCAAGGCCTTGCGTGAGGACAAGCCGGCGGACGAGGTGCAGGCCGACACGCCGGCTGCGCCCGAGACCGCTGAGGTG
CCGCAGCCGGCGCCGCGCAAGTCGTCCGAGAGCACCGAGCCGTCGAAGTCAGCCCGCCGCGGCGGCAAGGTCGACGTTAT
GGGTGTCTTGATCTCGAGCCCCGACAAGGTGCTCTGGCCGGACGCCAACGACGGCCGGCCAGTCACCAAGGAGGATCTGG
CCCGCTATTACGAAGCTGTCGGCCCTTGGCTGATCGACCATATCCGGGGCCGGCCGTGCTCCATCATCCGGGCGCCGGAT
GGGATCGGCGGCACGCAATTCTTCCAGCGCCACGCCATGCCGGGAACGTCCAGCCTGCTGGAACTCGTGACCGTCTTCGG
CGACAAGAAGCCGTATCTTCAGATCGATCGCGTGGAAGGGCTGGCCGCCGTCGCCCAGGTGGGCGCTTTGGAGTTGCATC
CCTGGAATTGCGTGCCCCAGCATCCGGAAGTGCCCGGTCGCCTCGTCTTCGATCTCGACCCTGGCCCGGACGTGCCGTTC
TCGACGGTCGTCGAAGCCGCGCGGGAGATGCGCCAGCGGCTCGATGCACTCGGCCTGGTGAGCTTCTGCAAGACGACCGG
CGGAAAAGGCCTGCATGTCGTCACGCCGCTGGCGGTGTCCAGGCGCAATCCGCTCTCCTGGCCGCAGGCCAAGGGCTTCG
CGCGGGATGTCTGCCTGCAGATGGTGCGCGACAATCCGGAGCTCTATCTGATCAAGATGACCAAGGCCCTGAGGACAGGC
CGTATCTTCCTCGACTATCTGCGCAACGATCGCATGGCGACCGCCGTGGCGCCGCTTTCTCCCCGCGCTCGGCCCGGCGC
CACCGTCTCCATGCCCCTCACCTGGGACGAGGTCACAGCCGATCTCGACCCGAGGCGCTTCACGCTCCGCACCGTTCCCG
GGCTGTTGGCGAAAAGCGCGCCCTGGGATGACTACAGCGACGGCGAGCGCCCGCTGGAGCCGGCCATCCGGCGGCTGGGC
AAGGCCATGAAGGCGGCGTGA

Upstream 100 bases:

>100_bases
CGTCGGACGCGCTCGAAGCCGGCGGGGCCGGAGTGACGCCACTTCTTCTCCCCGACATTTCCGGTCGAGGACTGATGTGC
TTTCTGGCCCGAGGTCAACC

Downstream 100 bases:

>100_bases
ACCGCCGGGACGGCGATCTCAATGCCGTTCTCCGGCCCGGGTCTCTCCGGTCGGGTCCACGCGCTCTGCGCCCTGCGCCT
CGTTCGGCCATTCGGAATTG

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 886; Mature: 885

Protein sequence:

>886_residues
MATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSWAVTRGPSLDPHDKRLAVEVE
DHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPEQALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLL
MKHRDAFAVAANGAAILDDYDTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDK
IATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTARFAAIARAAGKLPDAIIDGEI
CALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGEDLRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVL
RSACRLSLEGIVSKRADAPYVSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVR
GLLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALREDKPADEVQADTPAAPETAEV
PQPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWPDANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPD
GIGGTQFFQRHAMPGTSSLLELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPF
STVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQMVRDNPELYLIKMTKALRTG
RIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTADLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLG
KAMKAA

Sequences:

>Translated_886_residues
MATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSWAVTRGPSLDPHDKRLAVEVE
DHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPEQALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLL
MKHRDAFAVAANGAAILDDYDTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDK
IATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTARFAAIARAAGKLPDAIIDGEI
CALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGEDLRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVL
RSACRLSLEGIVSKRADAPYVSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVR
GLLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALREDKPADEVQADTPAAPETAEV
PQPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWPDANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPD
GIGGTQFFQRHAMPGTSSLLELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPF
STVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQMVRDNPELYLIKMTKALRTG
RIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTADLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLG
KAMKAA
>Mature_885_residues
ATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSWAVTRGPSLDPHDKRLAVEVED
HPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPEQALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLLM
KHRDAFAVAANGAAILDDYDTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDKI
ATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTARFAAIARAAGKLPDAIIDGEIC
ALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGEDLRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVLR
SACRLSLEGIVSKRADAPYVSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVRG
LLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALREDKPADEVQADTPAAPETAEVP
QPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWPDANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPDG
IGGTQFFQRHAMPGTSSLLELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPFS
TVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQMVRDNPELYLIKMTKALRTGR
IFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTADLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLGK
AMKAA

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 96872; Mature: 96741

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
CCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCHHHHH
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPE
EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCHH
QALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLLMKHRDAFAVAANGAAILDDY
HHHHCCCEEEEECCCEECCEEEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCEEEECC
DTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDK
CCHHHCCCEEEEEECCCCCCCEEEEEECCEECCCCCCCCCCCCHHHHHHCCHHCCCCCCH
IATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTAR
HCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEECCEEEEEECCCCCHHHH
FAAIARAAGKLPDAIIDGEICALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGED
HHHHHHHHCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHCCCHH
LRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVLRSACRLSLEGIVSKRADAPY
HHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
VSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVR
CCCCCCCHHHHHHCCCCEEEEECEEHHHHHHHHHHEEEECCCCEEEEECCCCCCHHHHHH
GLLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALRE
HHHHHHHHHHHHCCCCCEECCCCCCCCEEEECHHHEEEEEECCCCCCCHHHHHHHHHHHC
DKPADEVQADTPAAPETAEVPQPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWP
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCEECC
DANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPDGIGGTQFFQRHAMPGTSSLL
CCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHH
ELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPF
HHHHHHCCCCCCEEEECHHHHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCH
STVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCCCHHCCHHHHHHHH
MVRDNPELYLIKMTKALRTGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTA
HHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCHHHHHC
DLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLGKAMKAA
CCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
CCCCCHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCHHHHH
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPE
EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCHH
QALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLLMKHRDAFAVAANGAAILDDY
HHHHCCCEEEEECCCEECCEEEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCEEEECC
DTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDK
CCHHHCCCEEEEEECCCCCCCEEEEEECCEECCCCCCCCCCCCHHHHHHCCHHCCCCCCH
IATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTAR
HCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEECCEEEEEECCCCCHHHH
FAAIARAAGKLPDAIIDGEICALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGED
HHHHHHHHCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHCCCHH
LRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVLRSACRLSLEGIVSKRADAPY
HHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
VSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVR
CCCCCCCHHHHHHCCCCEEEEECEEHHHHHHHHHHEEEECCCCEEEEECCCCCCHHHHHH
GLLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALRE
HHHHHHHHHHHHCCCCCEECCCCCCCCEEEECHHHEEEEEECCCCCCCHHHHHHHHHHHC
DKPADEVQADTPAAPETAEVPQPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWP
CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCEECC
DANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPDGIGGTQFFQRHAMPGTSSLL
CCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHH
ELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPF
HHHHHHCCCCCCEEEECHHHHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCH
STVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCCCHHCCHHHHHHHH
MVRDNPELYLIKMTKALRTGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTA
HHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCHHHHHC
DLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLGKAMKAA
CCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]