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The map label for this gene is secD [H]

Identifier: 154248230

GI number: 154248230

Start: 4777716

End: 4778789

Strand: Direct

Name: secD [H]

Synonym: Xaut_4310

Alternate gene names: 154248230

Gene position: 4777716-4778789 (Clockwise)

Preceding gene: 154248229

Following gene: 154248231

Centisome position: 89.99

GC content: 64.99

Gene sequence:

>1074_bases
ATGCCCTTGATCGATTACATTCCGGCGCAGACCAACATCCACTTCATGCGCCTGCGCCACTGGACGTTCCCGTTCTCGGC
GGTGATATCCATCGTCGCCGTGGTGCTGTTCGCCATCCATGGCTTCAACCTGGGCATCGATTTTAAGGGCGGCACCCTGA
TCGAGGCGCAGACCAGCCAGCAGGTCGCCGACGTGGGTGCCCTGCGCGAGCACCTGACTGACCTCGACGTGGGCGACGTG
CAGATCCAGGAATTCGGCTCGCCCCGAGACGTGCTGATCCGCGTCGGTGCGTTCGGCACTACCGATGAGGCCCAGCAGGC
GATCATCACCAAGGTGCGCGACGTGCTCGGCGCCGAATACAGCGTGCGCCGCGTGGAGACGGTGGGCCCGAGCGTGTCGG
GCGAACTGGTGCGTCAGTCCATCCTCGCCCTGGTGCTCGGCGCGGTGGCGGTGCTCGCCTATCTGTGGTTCCGCTTCGAA
TGGCAGTTCGCCGTGGGTGCCATCGTGACGACGATGCACGACATCTTCGTCACCCTGATGATCTATTCGGCCTTCGGCAT
TGATTTCGATCTCACGTCGATCGCGGCCATCCTCACCATCATGGGCTATTCGCTCAACGACACGGTGGTGGTGTACGACC
GCATCCGCGAGATGCTGCGCCGCTACAAGAAGCTGCCGCTGCCGGAGCTGCTCGACATCGCGGTGAATGCCACCTTCTCG
CGAACCATCATCGTTTCCACCACCACATTCTTCGCCACCCTCGCCCTCTATTTCTTCGGCGGCGAGGTGCTGCGCGGCTT
CTCGCTGGCCATGACAGTGGGCGTGGTGATCGGCACCTATTCCACCATCTTCGTGGCGGCGCCCATCCTCATCCACCTGG
GCCTGCGCTCGTCGACGGTGGCCGGCCCGGCCAAGAGTGAGCCGGAAGCGGTGCTGGGCGTGGACGAGGCGGCCAAGCTC
TCCGAGGCGGAAGCCGAAGTGGTGGATGAGCCGGTGCCTCCGGCTCCGGCCAAGGGCGGCAGCAAGGGCGCCAAGGGCGG
TAAGCGTCCGCCCGCCCGTCCCGCCAAGGCGTGA

Upstream 100 bases:

>100_bases
ACCACCATGTTCACTGCCTATACCCTGACGCGGCTGATGATCGCCTATTGGGTGAAGTGGCGGCGGCCGGCAAAGCTGCC
CATCTGAAGGTCCGCCGCAC

Downstream 100 bases:

>100_bases
TGCGGTGGCAAGCCCGCCCGGCGTGCCCTTCTTCCCCCGGCAGGTCACCATAGATGGCTATGGCGACCGCTTCTTCCACT
TCGCCAGCATGTCCCATGCG

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MPLIDYIPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQQVADVGALREHLTDLDVGDV
QIQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVLGAEYSVRRVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFE
WQFAVGAIVTTMHDIFVTLMIYSAFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKLPLPELLDIAVNATFS
RTIIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRSSTVAGPAKSEPEAVLGVDEAAKL
SEAEAEVVDEPVPPAPAKGGSKGAKGGKRPPARPAKA

Sequences:

>Translated_357_residues
MPLIDYIPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQQVADVGALREHLTDLDVGDV
QIQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVLGAEYSVRRVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFE
WQFAVGAIVTTMHDIFVTLMIYSAFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKLPLPELLDIAVNATFS
RTIIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRSSTVAGPAKSEPEAVLGVDEAAKL
SEAEAEVVDEPVPPAPAKGGSKGAKGGKRPPARPAKA
>Mature_356_residues
PLIDYIPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQQVADVGALREHLTDLDVGDVQ
IQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVLGAEYSVRRVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFEW
QFAVGAIVTTMHDIFVTLMIYSAFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKLPLPELLDIAVNATFSR
TIIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRSSTVAGPAKSEPEAVLGVDEAAKLS
EAEAEVVDEPVPPAPAKGGSKGAKGGKRPPARPAKA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=286, Percent_Identity=38.8111888111888, Blast_Score=219, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 38573; Mature: 38442

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLIDYIPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQ
CCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCHHH
QVADVGALREHLTDLDVGDVQIQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVLGAEY
HHHHHHHHHHHHCCCCCCCEEHHHCCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHCCCH
SVRRVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFEWQFAVGAIVTTMHDIFVTLM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYSAFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKLPLPELLDIAVNATFS
HHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
RTIIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRSSTV
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGPAKSEPEAVLGVDEAAKLSEAEAEVVDEPVPPAPAKGGSKGAKGGKRPPARPAKA
CCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLIDYIPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQ
CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCHHH
QVADVGALREHLTDLDVGDVQIQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVLGAEY
HHHHHHHHHHHHCCCCCCCEEHHHCCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHCCCH
SVRRVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFEWQFAVGAIVTTMHDIFVTLM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYSAFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRYKKLPLPELLDIAVNATFS
HHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
RTIIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRSSTV
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGPAKSEPEAVLGVDEAAKLSEAEAEVVDEPVPPAPAKGGSKGAKGGKRPPARPAKA
CCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]