| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is ppdK [H]
Identifier: 154248224
GI number: 154248224
Start: 4769319
End: 4770956
Strand: Reverse
Name: ppdK [H]
Synonym: Xaut_4304
Alternate gene names: 154248224
Gene position: 4770956-4769319 (Counterclockwise)
Preceding gene: 154248225
Following gene: 154248221
Centisome position: 89.87
GC content: 70.7
Gene sequence:
>1638_bases GTGACAACCCTCAGCGCGCGCCTGTCCGACGCGGACGAACCGCACGGCTCCCACCGGGCAGCCTCGCCCCTGATTGGCTT CATCGGTCCCGGCGGCGACACCCAGCCGCTCTCCGCCCACGCCTTCGGCTCCAAGGCCGCGCAGCTGTGGCGCATGAATG CCCTCGGCCTCAACGTGCCGCCGGCCTTCGTGCTCTCCACCGCCCTGTGCGGGAAGCCCCATGCCGAAAAGCGCATAGGC TCCCTGCTGGAGCAGGGCATCGCTTATCTCGAACGCGTCACCGCACGCGGCTTCGGCGACCGGCGCCGGCCTCTCCTCGT CTCGGTGCGCTCGGGGGCGGAAAAGTCCATGCCCGGCATGCTGGAAACGGTGCTGGACGTGGGCATGACCGCAGCGACCA CCCGCGGCCTGATGCGCCTTTACGGTAATCCGCGCCTTGCGGCCGATTGCCGGCGGCGCTTCATCGAAGGCTATTGCGAG GTGGTGGCGGGCCTGCCGCGCGGACCGTTCGAGGACGTGCTGCGCGCCGTTCAGACCGCCGAGGATGTCACATCCGACCG GGAGCTGGATCCAGAGGCGTTGGACCGGCTCGCCGGCCTTTATCTCGATCTTGCCCGCGACCGGTTCGGCACCGCCATCC CGGAGGAGCCCATGGACCAGTTGCGGGCGGCGGCCGAGGCCGTGTTCCGCTCCTGGGATGCGCCCAAGGCGCAGGACTAT CGCCGCCTCAACCACCTGGAGAACCTGTCGGGCACGGCGGTGACGGTGCAGGCCATGGTGTTCGGCAATGCCAGCGCCCG CTCGGGCTCCGGCGTCGCCTTCTCCCGCGATCCCGCGACGGGGGCCAATGGCCTTTATGCGGACATGCTGTTCGAGGCCC AGGGCGAGGACGTGGTCTCCGGCCGCCGCCAGCCGGTGGGGCTCGGCCGGCTCGAGGCCCTGCTGCCGGATGTGGCGACA CAGCTCGCCGCAGGGGTTGGCGCGCTGGAAGCGGCCTATCGCGACGTGCAGGACGTGGAATTCACCTTCGAGGATGGCCG CCTGTTCTTCCTCCAGACCCGTTCCGCCAAGCGCACGCCCCGCGCGGCGCTGAAGATCGCGGTGGATCTCGTGGCCCAAG GGATGCGCACAGAGGCGGAGGGCCTCGCCCTGCTCGACGGCATCGACCTGTCGCAAGTGGGAACCACACGTTTCACCGGG ACGGCGGAGGTTGCGGCGCGGGGCGTGGCCGCCTCTCCAGGCACGGTAAGCGGGCGTGTCGCTTTCGACGGCGAGGCCGC CAAGCGCCTCTCGGAAGGCGGCGATCCCGTCATCCTGGTGCGGCCTGACGTGGCGACCGACGATATCGCCGGCATGGCGC TGGCGGCCGGCGTGCTCACCCGTGTCGGGGGTCGCACCGCCCATGCGGCGGTGGTCGCGCGCCAGCTCGGGCGCGTCTGC GTGGTGGGGTGCGCGCCGCTGGCCATCGATCTCGACTCACGCAGTGCCCGCCTCGGCCGAGCGCAGGTCCAAGAGGGCGA CTGGTTATCGCTGGACGGCGACGAAGGAACAGTCTTCGTCGGCCGCCGCGAGAGTGTCGTGGACCGTCCCGAGGCGGAAC TGGACACGGTGGCAGGCTGGATGGCGCGAACGCGGTAG
Upstream 100 bases:
>100_bases TCGCGACCATGGAGGTGGCCCGCGCCATGGAAACCGGCACCGACCATCTCGCCCGCGCCGCCCTGGCGCTGCGCGGCTGT GTTCTGGAGGAGGTGGGATC
Downstream 100 bases:
>100_bases CAGCGGTTCAGCCGTACCGGTCAGCGCTTGCGTTCGGAAGAGCTGAAATTGCTCGCGTGCCCTTCCCGCGCAGCTTGGGC GCGCCATACCTTGGCGGCGG
Product: pyruvate phosphate dikinase PEP/pyruvate-binding
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MTTLSARLSDADEPHGSHRAASPLIGFIGPGGDTQPLSAHAFGSKAAQLWRMNALGLNVPPAFVLSTALCGKPHAEKRIG SLLEQGIAYLERVTARGFGDRRRPLLVSVRSGAEKSMPGMLETVLDVGMTAATTRGLMRLYGNPRLAADCRRRFIEGYCE VVAGLPRGPFEDVLRAVQTAEDVTSDRELDPEALDRLAGLYLDLARDRFGTAIPEEPMDQLRAAAEAVFRSWDAPKAQDY RRLNHLENLSGTAVTVQAMVFGNASARSGSGVAFSRDPATGANGLYADMLFEAQGEDVVSGRRQPVGLGRLEALLPDVAT QLAAGVGALEAAYRDVQDVEFTFEDGRLFFLQTRSAKRTPRAALKIAVDLVAQGMRTEAEGLALLDGIDLSQVGTTRFTG TAEVAARGVAASPGTVSGRVAFDGEAAKRLSEGGDPVILVRPDVATDDIAGMALAAGVLTRVGGRTAHAAVVARQLGRVC VVGCAPLAIDLDSRSARLGRAQVQEGDWLSLDGDEGTVFVGRRESVVDRPEAELDTVAGWMARTR
Sequences:
>Translated_545_residues MTTLSARLSDADEPHGSHRAASPLIGFIGPGGDTQPLSAHAFGSKAAQLWRMNALGLNVPPAFVLSTALCGKPHAEKRIG SLLEQGIAYLERVTARGFGDRRRPLLVSVRSGAEKSMPGMLETVLDVGMTAATTRGLMRLYGNPRLAADCRRRFIEGYCE VVAGLPRGPFEDVLRAVQTAEDVTSDRELDPEALDRLAGLYLDLARDRFGTAIPEEPMDQLRAAAEAVFRSWDAPKAQDY RRLNHLENLSGTAVTVQAMVFGNASARSGSGVAFSRDPATGANGLYADMLFEAQGEDVVSGRRQPVGLGRLEALLPDVAT QLAAGVGALEAAYRDVQDVEFTFEDGRLFFLQTRSAKRTPRAALKIAVDLVAQGMRTEAEGLALLDGIDLSQVGTTRFTG TAEVAARGVAASPGTVSGRVAFDGEAAKRLSEGGDPVILVRPDVATDDIAGMALAAGVLTRVGGRTAHAAVVARQLGRVC VVGCAPLAIDLDSRSARLGRAQVQEGDWLSLDGDEGTVFVGRRESVVDRPEAELDTVAGWMARTR >Mature_544_residues TTLSARLSDADEPHGSHRAASPLIGFIGPGGDTQPLSAHAFGSKAAQLWRMNALGLNVPPAFVLSTALCGKPHAEKRIGS LLEQGIAYLERVTARGFGDRRRPLLVSVRSGAEKSMPGMLETVLDVGMTAATTRGLMRLYGNPRLAADCRRRFIEGYCEV VAGLPRGPFEDVLRAVQTAEDVTSDRELDPEALDRLAGLYLDLARDRFGTAIPEEPMDQLRAAAEAVFRSWDAPKAQDYR RLNHLENLSGTAVTVQAMVFGNASARSGSGVAFSRDPATGANGLYADMLFEAQGEDVVSGRRQPVGLGRLEALLPDVATQ LAAGVGALEAAYRDVQDVEFTFEDGRLFFLQTRSAKRTPRAALKIAVDLVAQGMRTEAEGLALLDGIDLSQVGTTRFTGT AEVAARGVAASPGTVSGRVAFDGEAAKRLSEGGDPVILVRPDVATDDIAGMALAAGVLTRVGGRTAHAAVVARQLGRVCV VGCAPLAIDLDSRSARLGRAQVQEGDWLSLDGDEGTVFVGRRESVVDRPEAELDTVAGWMARTR
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
None
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 57801; Mature: 57670
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLSARLSDADEPHGSHRAASPLIGFIGPGGDTQPLSAHAFGSKAAQLWRMNALGLNVP CCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC PAFVLSTALCGKPHAEKRIGSLLEQGIAYLERVTARGFGDRRRPLLVSVRSGAEKSMPGM HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHH LETVLDVGMTAATTRGLMRLYGNPRLAADCRRRFIEGYCEVVAGLPRGPFEDVLRAVQTA HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EDVTSDRELDPEALDRLAGLYLDLARDRFGTAIPEEPMDQLRAAAEAVFRSWDAPKAQDY HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH RRLNHLENLSGTAVTVQAMVFGNASARSGSGVAFSRDPATGANGLYADMLFEAQGEDVVS HHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCHHHC GRRQPVGLGRLEALLPDVATQLAAGVGALEAAYRDVQDVEFTFEDGRLFFLQTRSAKRTP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEEECCEEEEEECCCCCCCH RAALKIAVDLVAQGMRTEAEGLALLDGIDLSQVGTTRFTGTAEVAARGVAASPGTVSGRV HHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHCCCCCCCCCCCCEE AFDGEAAKRLSEGGDPVILVRPDVATDDIAGMALAAGVLTRVGGRTAHAAVVARQLGRVC EECCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEE VVGCAPLAIDLDSRSARLGRAQVQEGDWLSLDGDEGTVFVGRRESVVDRPEAELDTVAGW EEECCCEEEECCCCCCHHCHHHCCCCCEEEEECCCCEEEECCCHHHCCCCCHHHHHHHHH MARTR HHHCC >Mature Secondary Structure TTLSARLSDADEPHGSHRAASPLIGFIGPGGDTQPLSAHAFGSKAAQLWRMNALGLNVP CCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC PAFVLSTALCGKPHAEKRIGSLLEQGIAYLERVTARGFGDRRRPLLVSVRSGAEKSMPGM HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHH LETVLDVGMTAATTRGLMRLYGNPRLAADCRRRFIEGYCEVVAGLPRGPFEDVLRAVQTA HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EDVTSDRELDPEALDRLAGLYLDLARDRFGTAIPEEPMDQLRAAAEAVFRSWDAPKAQDY HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH RRLNHLENLSGTAVTVQAMVFGNASARSGSGVAFSRDPATGANGLYADMLFEAQGEDVVS HHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCHHHC GRRQPVGLGRLEALLPDVATQLAAGVGALEAAYRDVQDVEFTFEDGRLFFLQTRSAKRTP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEEECCEEEEEECCCCCCCH RAALKIAVDLVAQGMRTEAEGLALLDGIDLSQVGTTRFTGTAEVAARGVAASPGTVSGRV HHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHCCCCCCCCCCCCEE AFDGEAAKRLSEGGDPVILVRPDVATDDIAGMALAAGVLTRVGGRTAHAAVVARQLGRVC EECCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEE VVGCAPLAIDLDSRSARLGRAQVQEGDWLSLDGDEGTVFVGRRESVVDRPEAELDTVAGW EEECCCEEEECCCCCCHHCHHHCCCCCEEEEECCCCEEEECCCHHHCCCCCHHHHHHHHH MARTR HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]