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The map label for this gene is ydhC [H]

Identifier: 154247995

GI number: 154247995

Start: 4507679

End: 4508464

Strand: Reverse

Name: ydhC [H]

Synonym: Xaut_4074

Alternate gene names: 154247995

Gene position: 4508464-4507679 (Counterclockwise)

Preceding gene: 154247996

Following gene: 154247994

Centisome position: 84.92

GC content: 66.79

Gene sequence:

>786_bases
ATGGCGCAGACCAAGGAGGCGCGCGAGGCCGGGACGGCAGAACCGTCTTCCGTGTTCGCACCCATCACCCCCGCACCGGC
CTACAAGCTGGTGGCGGATGCCATCGAGCGGCAGATTGTCTCCGGCCGGGTACGGGCGGGCGACGCCCTGGGCACGGAGG
CGGAGCTGGTGCGCCAGTTCGGCGTCAACCGCTCCACCGTGCGCGAGGGCATCCGGCTTCTGGAGCAGAGCGGCCTGATC
CGGCGCGATTCCAGCCGCCGGCTGTTTGCCGCCGTGCCCCATTACGACCGGTTCGCCGGGGGCATCAGCCGTGCCTTCGT
GCTCAACGAGATCACCTTCCGCGAGCTGTGGGAATCGACCCTGGCCATCGAGACCGCGGTGGCGGAGCTGGCGGCGGAGC
GGATCACGGACGCGATCCTGGCCGAGCTGGAAGACAACATGAGGAAATCGGAGAAGGCGATGAAAAAGCCCTCCGAACTG
GCGCTGCTCGACATCGAGTTCCACGATATCCTTGCGCGCGCCTCCGGCAACCGCGTGCTACAGTTCGCGCGCGAGCCGGA
AAACAAGCTGTTCTTCCCCACCACCGAAATGCTGTTCCGGCGCAATGCCCACGCCGCCGAGCGCAACAAGGCGGCCCATG
TCGCCATCATCGAGGCCTTGCGCGCGCACGACAAGGCGCAGGCGGTGTTGTGGATGCGCCGGCACATCAACGACTGGAAG
CGCGGCTTCGAGCTGATCGGCAAGTCCATCGACCAGGCCATCGACCGCACCTACGCCGAGGATTGA

Upstream 100 bases:

>100_bases
AGGGTTCTCCGCCCAGCCGGCGCCTCGACAGGATTTGCCGGGCAGCCTATGTCAGGATGAGGCCCCGAGGGCCGCCAATG
CGGGACGAGAGCGAGGACAG

Downstream 100 bases:

>100_bases
GACCCGCTGCGCCCGGATGCGGGCTGCCGGCGTGCATTCCCTTGACCGTAAAGTTACTCATGAGTAACTTTACGTCCCAC
AGGTCGGACGGCTTCCCGCG

Product: GntR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MAQTKEAREAGTAEPSSVFAPITPAPAYKLVADAIERQIVSGRVRAGDALGTEAELVRQFGVNRSTVREGIRLLEQSGLI
RRDSSRRLFAAVPHYDRFAGGISRAFVLNEITFRELWESTLAIETAVAELAAERITDAILAELEDNMRKSEKAMKKPSEL
ALLDIEFHDILARASGNRVLQFAREPENKLFFPTTEMLFRRNAHAAERNKAAHVAIIEALRAHDKAQAVLWMRRHINDWK
RGFELIGKSIDQAIDRTYAED

Sequences:

>Translated_261_residues
MAQTKEAREAGTAEPSSVFAPITPAPAYKLVADAIERQIVSGRVRAGDALGTEAELVRQFGVNRSTVREGIRLLEQSGLI
RRDSSRRLFAAVPHYDRFAGGISRAFVLNEITFRELWESTLAIETAVAELAAERITDAILAELEDNMRKSEKAMKKPSEL
ALLDIEFHDILARASGNRVLQFAREPENKLFFPTTEMLFRRNAHAAERNKAAHVAIIEALRAHDKAQAVLWMRRHINDWK
RGFELIGKSIDQAIDRTYAED
>Mature_260_residues
AQTKEAREAGTAEPSSVFAPITPAPAYKLVADAIERQIVSGRVRAGDALGTEAELVRQFGVNRSTVREGIRLLEQSGLIR
RDSSRRLFAAVPHYDRFAGGISRAFVLNEITFRELWESTLAIETAVAELAAERITDAILAELEDNMRKSEKAMKKPSELA
LLDIEFHDILARASGNRVLQFAREPENKLFFPTTEMLFRRNAHAAERNKAAHVAIIEALRAHDKAQAVLWMRRHINDWKR
GFELIGKSIDQAIDRTYAED

Specific function: Sialic acid (NANA) and N-acetylmannosamine utilization [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789621, Length=238, Percent_Identity=22.2689075630252, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29336; Mature: 29205

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTKEAREAGTAEPSSVFAPITPAPAYKLVADAIERQIVSGRVRAGDALGTEAELVRQF
CCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
GVNRSTVREGIRLLEQSGLIRRDSSRRLFAAVPHYDRFAGGISRAFVLNEITFRELWEST
CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIETAVAELAAERITDAILAELEDNMRKSEKAMKKPSELALLDIEFHDILARASGNRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCHHH
QFAREPENKLFFPTTEMLFRRNAHAAERNKAAHVAIIEALRAHDKAQAVLWMRRHINDWK
HHHHCCCCCEECCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGFELIGKSIDQAIDRTYAED
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQTKEAREAGTAEPSSVFAPITPAPAYKLVADAIERQIVSGRVRAGDALGTEAELVRQF
CCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
GVNRSTVREGIRLLEQSGLIRRDSSRRLFAAVPHYDRFAGGISRAFVLNEITFRELWEST
CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIETAVAELAAERITDAILAELEDNMRKSEKAMKKPSELALLDIEFHDILARASGNRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCHHH
QFAREPENKLFFPTTEMLFRRNAHAAERNKAAHVAIIEALRAHDKAQAVLWMRRHINDWK
HHHHCCCCCEECCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGFELIGKSIDQAIDRTYAED
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]