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The map label for this gene is vanB [H]

Identifier: 154247988

GI number: 154247988

Start: 4501295

End: 4502254

Strand: Reverse

Name: vanB [H]

Synonym: Xaut_4067

Alternate gene names: 154247988

Gene position: 4502254-4501295 (Counterclockwise)

Preceding gene: 154247989

Following gene: 154247987

Centisome position: 84.81

GC content: 66.88

Gene sequence:

>960_bases
ATGTCGGACGAAGCCCTGCAGTCGGTGGTTGTGGCCAAGAAGACGGTCGAGGCCGAGAACATGGTCTCCTTCGAGCTCGT
CCCCGCCGAGGGCGGCGAGCTCGCGCCCTTTACGCCGGGCGCGCATCTGGACGTGACCATTCCCGGCGGCCTCATGCGCC
AGTATTCGCTCTGCAACAGCGCCAGCGAGCGGCACCGCTACGTGATCGGCGTGTGGAAGGATGCCAACAGCCGCGGCGGC
TCCAAGGCCTTGTTCCAGCAGGTGAACGAGGGTGACCGCCTGCAGGTGGGCGAGCCGCGCAACCGCTTCGCGGTGCCGCG
CGACGTGAAACGTGCCCTGCTGTTCGCCCGCGGCATCGGGGCCACCCCCATCCTCTCCATCGCCGACCACCTGAAGGCGA
AGAACATCCCGTTCGAGTTCCACTATCTGTTCGCCGGCGGCTCGCCGGGGTCGTTCCGCTCGATCATCGAGGCCTCGACC
TTCGCCGAGAACACCAGCTTCTATTTCGAGGCCGCCGAGCCGCGCCTCAACCCGGCGGCCCTGCTCGCCGACCGGCCGGA
CGACACCCACCTGTTCCTGTGCGGCGTGGACTGGTGGCTTGATCCGGTCATCGCCAACGCCCAGCAGAAGGGCTACGGCG
TCAACCGCATCCATGTGGAGCGCTTCACCGCCAAGGCGCCCCCACCGCTGCTGGACAAGGTGTTCGACGTGAAGATCGCC
AGCTCCGGCAAGGTCATCAAGATCCCCGGCGACCGCTCCGTCACCGCCGCGCTGGAGGAAGCCGGCGTGAAGGTGCCCAC
CTCCTGCGAGCAGGGCGCCTGCGGCACCTGCAAGGTGAAGGTGCTGGAAGGCGAGATCGACCACCGCGACAAGCGCCTGA
AGCCCGAGGAGAAGGAACAGGGCTATTTCCTGGCCTGCGTGTCGCGTGCCAAAGGCGACCTGCTGGTGTTGGATTTGTGA

Upstream 100 bases:

>100_bases
ACGGGATCCGAGCGCCGCGCACCATCGCACCTGCGGGAAGTTGGCCCCAAGTTTGCGTGTTGCTCTTCACCAGCGTTCCG
CGCGGATGAAGAGGTCAGCA

Downstream 100 bases:

>100_bases
CAATTCCACTTCGGGCGGCTTCGCGTTTCATGAACCCGCGAAGCCGCTCTCGAAGTCGAGTTCGTGCGTTTTCTTCAGGC
GAGCAGGTCTCCATTTCGCC

Product: ferredoxin

Products: 3,4-dihydroxybenzoate; NAD+; H2O; formaldehyde

Alternate protein names: Vanillate degradation ferredoxin-like protein [H]

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSDEALQSVVVAKKTVEAENMVSFELVPAEGGELAPFTPGAHLDVTIPGGLMRQYSLCNSASERHRYVIGVWKDANSRGG
SKALFQQVNEGDRLQVGEPRNRFAVPRDVKRALLFARGIGATPILSIADHLKAKNIPFEFHYLFAGGSPGSFRSIIEAST
FAENTSFYFEAAEPRLNPAALLADRPDDTHLFLCGVDWWLDPVIANAQQKGYGVNRIHVERFTAKAPPPLLDKVFDVKIA
SSGKVIKIPGDRSVTAALEEAGVKVPTSCEQGACGTCKVKVLEGEIDHRDKRLKPEEKEQGYFLACVSRAKGDLLVLDL

Sequences:

>Translated_319_residues
MSDEALQSVVVAKKTVEAENMVSFELVPAEGGELAPFTPGAHLDVTIPGGLMRQYSLCNSASERHRYVIGVWKDANSRGG
SKALFQQVNEGDRLQVGEPRNRFAVPRDVKRALLFARGIGATPILSIADHLKAKNIPFEFHYLFAGGSPGSFRSIIEAST
FAENTSFYFEAAEPRLNPAALLADRPDDTHLFLCGVDWWLDPVIANAQQKGYGVNRIHVERFTAKAPPPLLDKVFDVKIA
SSGKVIKIPGDRSVTAALEEAGVKVPTSCEQGACGTCKVKVLEGEIDHRDKRLKPEEKEQGYFLACVSRAKGDLLVLDL
>Mature_318_residues
SDEALQSVVVAKKTVEAENMVSFELVPAEGGELAPFTPGAHLDVTIPGGLMRQYSLCNSASERHRYVIGVWKDANSRGGS
KALFQQVNEGDRLQVGEPRNRFAVPRDVKRALLFARGIGATPILSIADHLKAKNIPFEFHYLFAGGSPGSFRSIIEASTF
AENTSFYFEAAEPRLNPAALLADRPDDTHLFLCGVDWWLDPVIANAQQKGYGVNRIHVERFTAKAPPPLLDKVFDVKIAS
SGKVIKIPGDRSVTAALEEAGVKVPTSCEQGACGTCKVKVLEGEIDHRDKRLKPEEKEQGYFLACVSRAKGDLLVLDL

Specific function: Unknown

COG id: COG1018

COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI1788104, Length=327, Percent_Identity=34.8623853211009, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1787098, Length=294, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR001433
- InterPro:   IPR000951
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: 1.14.13.82

Molecular weight: Translated: 34804; Mature: 34673

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEALQSVVVAKKTVEAENMVSFELVPAEGGELAPFTPGAHLDVTIPGGLMRQYSLCNS
CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHC
ASERHRYVIGVWKDANSRGGSKALFQQVNEGDRLQVGEPRNRFAVPRDVKRALLFARGIG
CCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCC
ATPILSIADHLKAKNIPFEFHYLFAGGSPGSFRSIIEASTFAENTSFYFEAAEPRLNPAA
CCHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCE
LLADRPDDTHLFLCGVDWWLDPVIANAQQKGYGVNRIHVERFTAKAPPPLLDKVFDVKIA
EEECCCCCCEEEEEECHHHHHHHHHCHHHCCCCCCEEEEEEECCCCCCHHHHHHEEEEEE
SSGKVIKIPGDRSVTAALEEAGVKVPTSCEQGACGTCKVKVLEGEIDHRDKRLKPEEKEQ
CCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHC
GYFLACVSRAKGDLLVLDL
CEEEEEEECCCCCEEEEEC
>Mature Secondary Structure 
SDEALQSVVVAKKTVEAENMVSFELVPAEGGELAPFTPGAHLDVTIPGGLMRQYSLCNS
CHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHC
ASERHRYVIGVWKDANSRGGSKALFQQVNEGDRLQVGEPRNRFAVPRDVKRALLFARGIG
CCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCC
ATPILSIADHLKAKNIPFEFHYLFAGGSPGSFRSIIEASTFAENTSFYFEAAEPRLNPAA
CCHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCE
LLADRPDDTHLFLCGVDWWLDPVIANAQQKGYGVNRIHVERFTAKAPPPLLDKVFDVKIA
EEECCCCCCEEEEEECHHHHHHHHHCHHHCCCCCCEEEEEEECCCCCCHHHHHHEEEEEE
SSGKVIKIPGDRSVTAALEEAGVKVPTSCEQGACGTCKVKVLEGEIDHRDKRLKPEEKEQ
CCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHC
GYFLACVSRAKGDLLVLDL
CEEEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: vanillate; O2; NADH; H+

Specific reaction: vanillate + O2 + NADH + H+ = 3,4-dihydroxybenzoate + NAD+ + H2O + formaldehyde

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9098058 [H]