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The map label for this gene is intZ [H]

Identifier: 154247950

GI number: 154247950

Start: 4457011

End: 4458414

Strand: Reverse

Name: intZ [H]

Synonym: Xaut_4029

Alternate gene names: 154247950

Gene position: 4458414-4457011 (Counterclockwise)

Preceding gene: 154247951

Following gene: 154247947

Centisome position: 83.98

GC content: 62.68

Gene sequence:

>1404_bases
ATGCCGAAAATCAAGCTCACCAAGACGGCGGTTGACGCCGCAAACCCGCAGGAACGCGACTACGAACTCCGTGATACGAC
GATACCCGGCTTTCTTGTAAAGATCACGCCGACCGGCCGGAAAACTTTCATGATCGCCTATGTCGCCAACAACGGTCAGC
GCCGCAAACCGGCGATCGGCCGCTATGGCGAGATCACCGTCGAGCAGGCGCGCAGGATCGCCCAGGACTGGCTCGCCGAA
GTCCGGCGCGGGGCTGACCCCAGCGCCGAGCGAACGGCAAGCCGCCAGGCCCCGACGGTCAAGGAACTCTTCGACCGCTT
CATCACCGACTATTCCGAAAGCCGGAACAAGCCTTCGACGGTCAAATCGAACCGGGGCTTTGGCAAGCGCCATATCCTTC
CCGCGCTCGGACACATGAAGGTGCCGGACGTCACCCGCAGCGATATCGCAAACCTGATGAAGAAAATGTCAAAGTCGCCG
GTAAACGCCAATCGCGTTCTCTCGGCCGTGCGAAAGATGTTCAATATGGCCGAGGTCTGGGGGATGAGACCGGACGGCAC
CAATCCCTGCCGGCACATTCCGAAATTCCCGGAACGCGGCAAGACCCGGCTCATCACCGACGCCGAAATGCGGAAGCTCT
TCGAGTATCTCGACCGTGCCGAAGCTGAAGGGCTGGAGCACCCTTTCATCATTCTAGCGATCCGGCTCCAGTTTGAGTTC
GCCGCACGCATGTCGGAGATCATCGAGCTCGAATGGTCCTGGGTTGATTTCGACAATCGCCGCGTCGTCTGGCCGGACAG
TAAGACCGGCGGGATGTCCAAGCCGATGAACGCCGAGGCGCTGCGCCTGTTCGAGACCGCGCCGCTGCTGGAGGATTCGC
CCTTTGTTTGCCCTTCGGTCTTCGACCCGAAGAAGGCGATGTCCCCTTACACTTACTATCAGGGCTGGAAGCGCATCCTG
AAGCGCGCCGGGCTCCCTCACGTCGGCACGCACGGCATCCGTCATCGTTCCGCGACGGACATCGCCAATTCCGGCGTGCC
GGTGAAGGTCGGTATGGCACTCACCGCCCACAAGACGGTGACGATGTTCATGCGCTACGTTCACACCGAGGACGATCCCG
TCCGGGCGGCGGCTGAAGCCGTCACGCAGCGCCGGATGAACGTCATTGGTGTCGAGCATCAGCCGCCTGCACCGCCGCCT
CCCGTCACGGAACTGCCCTCCATCGCCCCCGTGGTGGAGACCGCTCCTGCGACCCTTGGCCCGGATGGCAAGCCGCTCGG
CTTCGACGACGGCAAATACACATCGCGCACGCGGCTCGGAAACTACCGTCCCTTCCGTCACCGCAGCGGCGAGAACCGGG
ACGTGCCACCCGGGAGCAAGCGGGCCGAAGCGCAGGATGTGTGA

Upstream 100 bases:

>100_bases
CGGCTATCGATACATCCATACCTAACCGGACACACGCTACGGCTGGCTTTCCCCGTGCTCCTAAATTGCACCTGAAATCC
GGCCTCAACGGAGGTTAAGA

Downstream 100 bases:

>100_bases
GCCAGCCAAAGCCCAACGCCGCTGGCCAACGCCCGACATCCCGCTGGCCGTCTATGCTCTGCCCTTTATGCTCGGCGTTG
AGGCGGCACGATGGGCGTAC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MPKIKLTKTAVDAANPQERDYELRDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAE
VRRGADPSAERTASRQAPTVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTRSDIANLMKKMSKSP
VNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEF
AARMSEIIELEWSWVDFDNRRVVWPDSKTGGMSKPMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRIL
KRAGLPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTEDDPVRAAAEAVTQRRMNVIGVEHQPPAPPP
PVTELPSIAPVVETAPATLGPDGKPLGFDDGKYTSRTRLGNYRPFRHRSGENRDVPPGSKRAEAQDV

Sequences:

>Translated_467_residues
MPKIKLTKTAVDAANPQERDYELRDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAE
VRRGADPSAERTASRQAPTVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTRSDIANLMKKMSKSP
VNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEF
AARMSEIIELEWSWVDFDNRRVVWPDSKTGGMSKPMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRIL
KRAGLPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTEDDPVRAAAEAVTQRRMNVIGVEHQPPAPPP
PVTELPSIAPVVETAPATLGPDGKPLGFDDGKYTSRTRLGNYRPFRHRSGENRDVPPGSKRAEAQDV
>Mature_466_residues
PKIKLTKTAVDAANPQERDYELRDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEV
RRGADPSAERTASRQAPTVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTRSDIANLMKKMSKSPV
NANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFA
ARMSEIIELEWSWVDFDNRRVVWPDSKTGGMSKPMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRILK
RAGLPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTEDDPVRAAAEAVTQRRMNVIGVEHQPPAPPPP
VTELPSIAPVVETAPATLGPDGKPLGFDDGKYTSRTRLGNYRPFRHRSGENRDVPPGSKRAEAQDV

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=359, Percent_Identity=25.0696378830084, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 52548; Mature: 52417

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKIKLTKTAVDAANPQERDYELRDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIG
CCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCC
RYGEITVEQARRIAQDWLAEVRRGADPSAERTASRQAPTVKELFDRFITDYSESRNKPST
CCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
VKSNRGFGKRHILPALGHMKVPDVTRSDIANLMKKMSKSPVNANRVLSAVRKMFNMAEVW
CCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GMRPDGTNPCRHIPKFPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEF
CCCCCCCCHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHH
AARMSEIIELEWSWVDFDNRRVVWPDSKTGGMSKPMNAEALRLFETAPLLEDSPFVCPSV
HHHHHHHHEEEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
FDPKKAMSPYTYYQGWKRILKRAGLPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTV
CCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEECEEEHHHHHH
TMFMRYVHTEDDPVRAAAEAVTQRRMNVIGVEHQPPAPPPPVTELPSIAPVVETAPATLG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
PDGKPLGFDDGKYTSRTRLGNYRPFRHRSGENRDVPPGSKRAEAQDV
CCCCCCCCCCCCCCCHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKIKLTKTAVDAANPQERDYELRDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIG
CCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCC
RYGEITVEQARRIAQDWLAEVRRGADPSAERTASRQAPTVKELFDRFITDYSESRNKPST
CCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
VKSNRGFGKRHILPALGHMKVPDVTRSDIANLMKKMSKSPVNANRVLSAVRKMFNMAEVW
CCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GMRPDGTNPCRHIPKFPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEF
CCCCCCCCHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHH
AARMSEIIELEWSWVDFDNRRVVWPDSKTGGMSKPMNAEALRLFETAPLLEDSPFVCPSV
HHHHHHHHEEEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
FDPKKAMSPYTYYQGWKRILKRAGLPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTV
CCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEECEEEHHHHHH
TMFMRYVHTEDDPVRAAAEAVTQRRMNVIGVEHQPPAPPPPVTELPSIAPVVETAPATLG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
PDGKPLGFDDGKYTSRTRLGNYRPFRHRSGENRDVPPGSKRAEAQDV
CCCCCCCCCCCCCCCHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]