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The map label for this gene is trbF [H]

Identifier: 154247915

GI number: 154247915

Start: 4422170

End: 4422859

Strand: Reverse

Name: trbF [H]

Synonym: Xaut_3993

Alternate gene names: 154247915

Gene position: 4422859-4422170 (Counterclockwise)

Preceding gene: 154247916

Following gene: 154247914

Centisome position: 83.31

GC content: 68.99

Gene sequence:

>690_bases
ATGACCCCCTTCAAGCGCCCGTCGGTCCATTACGGCCGCTCCCCCGAGCCTGAGACGCCGTATCAGCGCGCGGCCCAGGT
CTGGGATGACCGCATCGGCTCGGCCCGGGTCCAGGCGAAGAACTGGCGCCTCATGGCCTTCGGCTGCCTCGCCCTGTCGG
CCGGCCTCTCCTGCGCCCTGGCGTGGCAGGCCCTGAGCGGCTCGGTGGTTCCGTGGGTGGTTCAGGTGGACAAGCTCGGT
CAGGCGCAGGCGGTCGCGCCGGCCGCCTCGGACTATCGCCCCTCCGATCCCCAGATCGCCTTCCACCTCGCCCGCTTCAT
TGAAGAGGTCCGCAGCATCTCTGCCGATCCCGTGATCGTCCGCCAGAACTGGCTCAGGGCCTACGCCTACACGACCCTGG
CCGGAGCAATCGCCCTCAACGACTATGCCCGCGCCAATGATCCTTTCGCCCGGGTCGGCAAGCAGCAGGTGGCGGTGGAG
GTCTCCAGCGTGATCCGGGCCTCGCCGGACTCCTTCCGCATCGCCTGGACCGAGCGCCGCTTCCAGGACGGCAGCCTCGC
CGACACCTCCCGCTGGAGCGCCATCCTCACCGTCGCGGTGCAGGCGCCGCGGGATGCGGATCGGCTCCGGGCCAATCCGC
TGGGGATCTACGTCAACGCCATCAACTGGTCGAAGGAACTCGCACAATGA

Upstream 100 bases:

>100_bases
AGCAGGTCGCCCACGGCATCCAGACCGCGACCCATGCCGTCCGATCCGGCGACAGCCATGGCGGCGGGTCGTCCATCTCC
CTCTCCGAAAGCGATCGCCC

Downstream 100 bases:

>100_bases
TGCCTGCCATCCGCACATCCGGGAGGCCGGCTTTCCGCGTCCTCTCCTTTCCGTCTTTCCGGAAGTCCGGCTTGCCACTT
CTCCTGCTTTGCACATCGGC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTPFKRPSVHYGRSPEPETPYQRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSCALAWQALSGSVVPWVVQVDKLG
QAQAVAPAASDYRPSDPQIAFHLARFIEEVRSISADPVIVRQNWLRAYAYTTLAGAIALNDYARANDPFARVGKQQVAVE
VSSVIRASPDSFRIAWTERRFQDGSLADTSRWSAILTVAVQAPRDADRLRANPLGIYVNAINWSKELAQ

Sequences:

>Translated_229_residues
MTPFKRPSVHYGRSPEPETPYQRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSCALAWQALSGSVVPWVVQVDKLG
QAQAVAPAASDYRPSDPQIAFHLARFIEEVRSISADPVIVRQNWLRAYAYTTLAGAIALNDYARANDPFARVGKQQVAVE
VSSVIRASPDSFRIAWTERRFQDGSLADTSRWSAILTVAVQAPRDADRLRANPLGIYVNAINWSKELAQ
>Mature_228_residues
TPFKRPSVHYGRSPEPETPYQRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSCALAWQALSGSVVPWVVQVDKLGQ
AQAVAPAASDYRPSDPQIAFHLARFIEEVRSISADPVIVRQNWLRAYAYTTLAGAIALNDYARANDPFARVGKQQVAVEV
SSVIRASPDSFRIAWTERRFQDGSLADTSRWSAILTVAVQAPRDADRLRANPLGIYVNAINWSKELAQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25297; Mature: 25166

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFKRPSVHYGRSPEPETPYQRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSCAL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCEEEEEHHHHHHHHCCHHEE
AWQALSGSVVPWVVQVDKLGQAQAVAPAASDYRPSDPQIAFHLARFIEEVRSISADPVIV
HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
RQNWLRAYAYTTLAGAIALNDYARANDPFARVGKQQVAVEVSSVIRASPDSFRIAWTERR
HHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCC
FQDGSLADTSRWSAILTVAVQAPRDADRLRANPLGIYVNAINWSKELAQ
CCCCCCCCCHHHHEEEEEEEECCCCHHHHCCCCEEEEEEEECCHHHHCC
>Mature Secondary Structure 
TPFKRPSVHYGRSPEPETPYQRAAQVWDDRIGSARVQAKNWRLMAFGCLALSAGLSCAL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCEEEEEHHHHHHHHCCHHEE
AWQALSGSVVPWVVQVDKLGQAQAVAPAASDYRPSDPQIAFHLARFIEEVRSISADPVIV
HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
RQNWLRAYAYTTLAGAIALNDYARANDPFARVGKQQVAVEVSSVIRASPDSFRIAWTERR
HHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECCC
FQDGSLADTSRWSAILTVAVQAPRDADRLRANPLGIYVNAINWSKELAQ
CCCCCCCCCHHHHEEEEEEEECCCCHHHHCCCCEEEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]