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The map label for this gene is stc [H]

Identifier: 154247436

GI number: 154247436

Start: 3903809

End: 3905704

Strand: Reverse

Name: stc [H]

Synonym: Xaut_3508

Alternate gene names: 154247436

Gene position: 3905704-3903809 (Counterclockwise)

Preceding gene: 154247440

Following gene: 154247435

Centisome position: 73.57

GC content: 70.62

Gene sequence:

>1896_bases
GTGCCATATCGCGAGATTGCCCGTGCCTGGGAGGCGTTTCACCAGGACGGCATCGCCTCATCCGTCGTCCGTCCCGCAGT
GCTGGCCTCCTGGCAGCGCTCGCGGCAGCACGCCATCACGGCGAGCCGGTCCGAAGCCCCCCTCGTGAGCGAGGCGGAGC
TGCATCGCCGCCGCCAGCAGAACACCCGGCTGATCGCCGCCGCACGCCCGGCCATGGACGAGGCGCGGCACCTGCTTTCC
GACGCGCGCTCCATGCTGATCCTCACCGACACCGAGGGCACCATCCTCGAAACCGAGGGCGACGCGCGGGCGGTGGATAC
CGGGCAGGAGGTGAAGCTCCAGCGCGGCGGCCTGTGGTGCGAGGCGCAGATCGGCACCAATGCCATCGGCACCGCGCTCG
CCTGCGGCCGGCCGGTGCAGATCCATGCCGCCGAGCATTTCTGCGCCAGCGTTCAGCGCTGGACCTGTGCCGCCGCTCCG
GTGCGCCATCCCGGCCATGGCGCGGTGATCGGTGCGGTGGATGTCTCCGGCTCCACCGATACCTTCAATCCGCAGAACCT
CGCCCATGCGGTGGCCCTCGCCCAGCAGATCGAGGCGGTGCTGGGCCGGCGCATGGAGATGGAGCACGAACAGGTGCTGC
GCCATTTCCTCTCCAAGCGCTCGCTCTGGCTTTCGGAGGAAATCCTCGCCTTCGGCCGCTCCGGCGCGCTCATCTATTCC
ACAGATCGCGCGCTGAAGGAGGTGATCCGCCGCAACGCGCACTTCATCGCCGACGGGCGCCTCGCCGCGCTCAACGATGT
GGCTCCGGCCGCCTGGGCCGAACGCGTCGCGGCGCTGCTGCCGGGCGCCAGCGTCGAGATCGTGCGCGAGGATGGCGAGG
AGATCGGCGGCGTGGTGGTGCTGCACGCCCCCCGCAAGCCGCGTCCGGTAATGCGCGAGGCGACGCGGGAGCCGGAGGTA
CTGCCCTTCGAGACCATCATCGGCGACAGCCCTGTGATGCGCGAGGTGCGGGAGAAGGCCCGGCGCATGGCCGAGAGCGG
CCTTCCCATCCTGCTCGAAGGCGAGACCGGGGTGGGCAAGGAGGTGTTCGCCCGCGCCATCCATGGCGGGCGCGCGCCTT
GCGGTCCGTTCGTGCCGCTCAATTGCGGCGGGCTGCCGCGCGACCTCATCGCCAGCGAGCTGTTCGGCTACGAGAAAGGC
GCCTTCACCGGCGCCGACACCGCCGGCAAGCAGGGCAAGGTGGAGGCAGCGGACGGCGGGCTGCTCTGCCTCGACGAGAT
CGGTGAGATGCCGCTGGAGCTGCAATCCTACCTGCTGCGCGTGCTGGAGGATGGCGTCGTCTACCGCGTCGGCGGGCATA
CGGGGCGGCGGGTCAACCTGCGCCTCGTGTCCATGACCAACCGTGACCTTTCCGGCGAGGTGGCGGCTGGGCGCTTCCGC
AAGGACCTGTTCTATCGCATCGCCGCGCTGCGCCTGCGCATCCCGCCGTTGCGCGAGCGCGGCGCGGATGTGGCCTTGTT
GCTCGACCATTTCGGCCGCAGTGCCTCAGCCCGCGCCGGCCTTCCCCCGCCCCGCTTCTCGCCGGCCGCCCACGCGGCGC
TCATGGCCTATGGGTGGCCCGGCAACGTGCGCGAATTGCGCAACGTGGTGGATATGCTGGTGGCCATGGGCGGCACCGGT
TGCGACGCGGACGCTCTGATCGACATCGCCGACCTGCCGCAGGAGATCCGAGAGGAAACCACCGGGACGGCACGAGCCAC
CGACCTCAAGGCGGTGGAGGAAGCTGCCATCCGCGCCGCCGTGGATGCCTGCGGGGGGAACCTCTCCCGGGCCGCCCGCC
GCCTCGGTATCGCTCGCTCGACCCTCTACATGCGCCTCTCCGCGCTGGAGCGCTGA

Upstream 100 bases:

>100_bases
GCGGCGCCGGCTGATCAGCCGGGCGGGCGCGCACGCTGGCCAACGGCTTAGGCGGCGCCTTTCGGGAACGCCGCGCCGCC
CGGCCCGGAGGGCAGAGCTG

Downstream 100 bases:

>100_bases
GCCTGACCTCGCCATGGCGCGCGCGCCTCGGCAGGGTATCGGAGGGTGTGCTAGCCTGCGCACCGACGAAAATTCATCCC
GGCAGGATCCCATGTCCCAG

Product: Fis family GAF modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 631; Mature: 630

Protein sequence:

>631_residues
MPYREIARAWEAFHQDGIASSVVRPAVLASWQRSRQHAITASRSEAPLVSEAELHRRRQQNTRLIAAARPAMDEARHLLS
DARSMLILTDTEGTILETEGDARAVDTGQEVKLQRGGLWCEAQIGTNAIGTALACGRPVQIHAAEHFCASVQRWTCAAAP
VRHPGHGAVIGAVDVSGSTDTFNPQNLAHAVALAQQIEAVLGRRMEMEHEQVLRHFLSKRSLWLSEEILAFGRSGALIYS
TDRALKEVIRRNAHFIADGRLAALNDVAPAAWAERVAALLPGASVEIVREDGEEIGGVVVLHAPRKPRPVMREATREPEV
LPFETIIGDSPVMREVREKARRMAESGLPILLEGETGVGKEVFARAIHGGRAPCGPFVPLNCGGLPRDLIASELFGYEKG
AFTGADTAGKQGKVEAADGGLLCLDEIGEMPLELQSYLLRVLEDGVVYRVGGHTGRRVNLRLVSMTNRDLSGEVAAGRFR
KDLFYRIAALRLRIPPLRERGADVALLLDHFGRSASARAGLPPPRFSPAAHAALMAYGWPGNVRELRNVVDMLVAMGGTG
CDADALIDIADLPQEIREETTGTARATDLKAVEEAAIRAAVDACGGNLSRAARRLGIARSTLYMRLSALER

Sequences:

>Translated_631_residues
MPYREIARAWEAFHQDGIASSVVRPAVLASWQRSRQHAITASRSEAPLVSEAELHRRRQQNTRLIAAARPAMDEARHLLS
DARSMLILTDTEGTILETEGDARAVDTGQEVKLQRGGLWCEAQIGTNAIGTALACGRPVQIHAAEHFCASVQRWTCAAAP
VRHPGHGAVIGAVDVSGSTDTFNPQNLAHAVALAQQIEAVLGRRMEMEHEQVLRHFLSKRSLWLSEEILAFGRSGALIYS
TDRALKEVIRRNAHFIADGRLAALNDVAPAAWAERVAALLPGASVEIVREDGEEIGGVVVLHAPRKPRPVMREATREPEV
LPFETIIGDSPVMREVREKARRMAESGLPILLEGETGVGKEVFARAIHGGRAPCGPFVPLNCGGLPRDLIASELFGYEKG
AFTGADTAGKQGKVEAADGGLLCLDEIGEMPLELQSYLLRVLEDGVVYRVGGHTGRRVNLRLVSMTNRDLSGEVAAGRFR
KDLFYRIAALRLRIPPLRERGADVALLLDHFGRSASARAGLPPPRFSPAAHAALMAYGWPGNVRELRNVVDMLVAMGGTG
CDADALIDIADLPQEIREETTGTARATDLKAVEEAAIRAAVDACGGNLSRAARRLGIARSTLYMRLSALER
>Mature_630_residues
PYREIARAWEAFHQDGIASSVVRPAVLASWQRSRQHAITASRSEAPLVSEAELHRRRQQNTRLIAAARPAMDEARHLLSD
ARSMLILTDTEGTILETEGDARAVDTGQEVKLQRGGLWCEAQIGTNAIGTALACGRPVQIHAAEHFCASVQRWTCAAAPV
RHPGHGAVIGAVDVSGSTDTFNPQNLAHAVALAQQIEAVLGRRMEMEHEQVLRHFLSKRSLWLSEEILAFGRSGALIYST
DRALKEVIRRNAHFIADGRLAALNDVAPAAWAERVAALLPGASVEIVREDGEEIGGVVVLHAPRKPRPVMREATREPEVL
PFETIIGDSPVMREVREKARRMAESGLPILLEGETGVGKEVFARAIHGGRAPCGPFVPLNCGGLPRDLIASELFGYEKGA
FTGADTAGKQGKVEAADGGLLCLDEIGEMPLELQSYLLRVLEDGVVYRVGGHTGRRVNLRLVSMTNRDLSGEVAAGRFRK
DLFYRIAALRLRIPPLRERGADVALLLDHFGRSASARAGLPPPRFSPAAHAALMAYGWPGNVRELRNVVDMLVAMGGTGC
DADALIDIADLPQEIREETTGTARATDLKAVEEAAIRAAVDACGGNLSRAARRLGIARSTLYMRLSALER

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=314, Percent_Identity=41.0828025477707, Blast_Score=236, Evalue=4e-63,
Organism=Escherichia coli, GI1790299, Length=338, Percent_Identity=40.2366863905325, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI1788905, Length=308, Percent_Identity=41.2337662337662, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1789233, Length=338, Percent_Identity=38.7573964497041, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1790437, Length=306, Percent_Identity=41.5032679738562, Blast_Score=215, Evalue=6e-57,
Organism=Escherichia coli, GI1786524, Length=325, Percent_Identity=40.9230769230769, Blast_Score=214, Evalue=9e-57,
Organism=Escherichia coli, GI87082152, Length=326, Percent_Identity=41.1042944785276, Blast_Score=208, Evalue=7e-55,
Organism=Escherichia coli, GI87082117, Length=233, Percent_Identity=45.0643776824034, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1789087, Length=313, Percent_Identity=39.297124600639, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI87081872, Length=308, Percent_Identity=38.6363636363636, Blast_Score=182, Evalue=6e-47,
Organism=Escherichia coli, GI1787583, Length=233, Percent_Identity=39.0557939914163, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI87081858, Length=644, Percent_Identity=24.8447204968944, Blast_Score=172, Evalue=8e-44,
Organism=Escherichia coli, GI1789828, Length=242, Percent_Identity=35.5371900826446, Blast_Score=128, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 68304; Mature: 68173

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYREIARAWEAFHQDGIASSVVRPAVLASWQRSRQHAITASRSEAPLVSEAELHRRRQQ
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
NTRLIAAARPAMDEARHLLSDARSMLILTDTEGTILETEGDARAVDTGQEVKLQRGGLWC
CCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCEEEECCCEEE
EAQIGTNAIGTALACGRPVQIHAAEHFCASVQRWTCAAAPVRHPGHGAVIGAVDVSGSTD
EECCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCC
TFNPQNLAHAVALAQQIEAVLGRRMEMEHEQVLRHFLSKRSLWLSEEILAFGRSGALIYS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEE
TDRALKEVIRRNAHFIADGRLAALNDVAPAAWAERVAALLPGASVEIVREDGEEIGGVVV
CHHHHHHHHHCCCCEEECCCEEEHHCCCHHHHHHHHHHHCCCCCEEEEECCCHHHCCEEE
LHAPRKPRPVMREATREPEVLPFETIIGDSPVMREVREKARRMAESGLPILLEGETGVGK
EECCCCCCHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
EVFARAIHGGRAPCGPFVPLNCGGLPRDLIASELFGYEKGAFTGADTAGKQGKVEAADGG
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCC
LLCLDEIGEMPLELQSYLLRVLEDGVVYRVGGHTGRRVNLRLVSMTNRDLSGEVAAGRFR
EEEHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHH
KDLFYRIAALRLRIPPLRERGADVALLLDHFGRSASARAGLPPPRFSPAAHAALMAYGWP
HHHHHHHHHHHHCCCCHHHCCCCEEEEHHHCCCCCCCCCCCCCCCCCHHHHHHHEEECCC
GNVRELRNVVDMLVAMGGTGCDADALIDIADLPQEIREETTGTARATDLKAVEEAAIRAA
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VDACGGNLSRAARRLGIARSTLYMRLSALER
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PYREIARAWEAFHQDGIASSVVRPAVLASWQRSRQHAITASRSEAPLVSEAELHRRRQQ
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
NTRLIAAARPAMDEARHLLSDARSMLILTDTEGTILETEGDARAVDTGQEVKLQRGGLWC
CCEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCEEEECCCEEE
EAQIGTNAIGTALACGRPVQIHAAEHFCASVQRWTCAAAPVRHPGHGAVIGAVDVSGSTD
EECCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCC
TFNPQNLAHAVALAQQIEAVLGRRMEMEHEQVLRHFLSKRSLWLSEEILAFGRSGALIYS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEE
TDRALKEVIRRNAHFIADGRLAALNDVAPAAWAERVAALLPGASVEIVREDGEEIGGVVV
CHHHHHHHHHCCCCEEECCCEEEHHCCCHHHHHHHHHHHCCCCCEEEEECCCHHHCCEEE
LHAPRKPRPVMREATREPEVLPFETIIGDSPVMREVREKARRMAESGLPILLEGETGVGK
EECCCCCCHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
EVFARAIHGGRAPCGPFVPLNCGGLPRDLIASELFGYEKGAFTGADTAGKQGKVEAADGG
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCC
LLCLDEIGEMPLELQSYLLRVLEDGVVYRVGGHTGRRVNLRLVSMTNRDLSGEVAAGRFR
EEEHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHH
KDLFYRIAALRLRIPPLRERGADVALLLDHFGRSASARAGLPPPRFSPAAHAALMAYGWP
HHHHHHHHHHHHCCCCHHHCCCCEEEEHHHCCCCCCCCCCCCCCCCCHHHHHHHEEECCC
GNVRELRNVVDMLVAMGGTGCDADALIDIADLPQEIREETTGTARATDLKAVEEAAIRAA
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VDACGGNLSRAARRLGIARSTLYMRLSALER
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA