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The map label for this gene is yfdZ [C]

Identifier: 154247425

GI number: 154247425

Start: 3892971

End: 3894152

Strand: Reverse

Name: yfdZ [C]

Synonym: Xaut_3497

Alternate gene names: 154247425

Gene position: 3894152-3892971 (Counterclockwise)

Preceding gene: 154247431

Following gene: 154247424

Centisome position: 73.35

GC content: 69.97

Gene sequence:

>1182_bases
ATGGCCGCAGCGCCCCTCCCCCGCTCCATTGCCCTCTCCCGCCGCAGCGCGGTGGAGCCGTTCATCGTCATGGACGTGAT
GGAGCACGCCGCCCGTATCGAGGCTGGCGGCGGACACGTCATCCATCTGGAGGTGGGCCAGCCGGCCGCTCCTGCCCCCA
CGGTGGCGCGGCGCGCGGCAGCGGCGGCACTGGAAGCGGGACAGGTTGGCTATACCGCCGCCCTCGGCATTCCGGCCCTG
CGTGCCCGCATCGCCCGCCATTATGGCGAGATCCATGGCGTCGCCGTGGACCCCGAGCGCGTCGTGGTGACCCACGGGTC
GTCCGGCGGCTTCGTGCTCGCCTTCCTGGCGCTGTTCGAACCCGGCGACCGGGTGGCCATCGCCGCGCCCGGCTATCCGC
CCTATCGCCATGTGCTCCATGCGCTGGGCTGTGAGCCGGTGCTGATCGAGACCCGGGCGGAGGACCGCCACGCCCTCACC
CCCGAGCGACTGCTGGAGGCCCACCGCAAGGCGCCGCTCAAGGGCGTGCTGGTGGCGAGCCCCGCCAACCCCACCGGCAC
CATGATGGACCGTGCCGCCCTGACCGCGCTTCATGCCTGCGCCCGCGACCTGAACCTCGCCTTCATCTCCGACGAGATCT
ACCACGGGCTCGACTACGCCTTCCCGGCGGTGAGCGCGGTGGAGATCGGCGAGGACGTCACCGTCATCAATTCCTTCTCC
AAATATTTCTGCATGACCGGCTGGCGGGTGGGCTGGATGGTGGTGCCGCCCGGCGTCTCACGCACCATGGAGCGGCTGCA
GCAGAACCTCTCCATCTCGGTGCCGACCCTGTCACAGATCGCCGCCGACGCCGCCTTCGAGGGCCGGGCCGAGATGGACC
TCGTCAAGGCGACCTATGTGGAGAACCGCCGCATCCTCACGGAAGGCCTGCCCCAGGCAGGGCTCAAGCGCTTCCTGCCG
GCGGACGGCGCCTTCTATCTCTATGCGGACGTGTCAGAGTTCACCGACGACAGCGCCGCCTTCGCCCGCCGCATGCTGGA
TGCGGCCCATGTGGCGACGACGCCGGGGGTGGATTTCGACCCCTTCCACGGCCACCAGTTCCTGCGCATCTCCTACGCGG
GCTCTGCCCCTGACATGGCGGAGGCGGTGGCGCGGATCGGCGCCTTCCTGAAGCGGGGATGA

Upstream 100 bases:

>100_bases
CCCGTCTCAGGGACAGTCAGAATAAGGCGGCAGCACGGCAGCGCGGACCTTCCGCTGCGTCCTGGCCCGCCAATACACGA
AACAAGCTGGAAATCGTAGC

Downstream 100 bases:

>100_bases
GGCGGCCGCCACACGGTCGCGCCAATTCCTGCTATAATGTTCCATCATGAGCCGGATGAGCGACCAGATCGTCGAGATCA
CCCCCGATGTGCTGCTGAAG

Product: class I and II aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAAAPLPRSIALSRRSAVEPFIVMDVMEHAARIEAGGGHVIHLEVGQPAAPAPTVARRAAAAALEAGQVGYTAALGIPAL
RARIARHYGEIHGVAVDPERVVVTHGSSGGFVLAFLALFEPGDRVAIAAPGYPPYRHVLHALGCEPVLIETRAEDRHALT
PERLLEAHRKAPLKGVLVASPANPTGTMMDRAALTALHACARDLNLAFISDEIYHGLDYAFPAVSAVEIGEDVTVINSFS
KYFCMTGWRVGWMVVPPGVSRTMERLQQNLSISVPTLSQIAADAAFEGRAEMDLVKATYVENRRILTEGLPQAGLKRFLP
ADGAFYLYADVSEFTDDSAAFARRMLDAAHVATTPGVDFDPFHGHQFLRISYAGSAPDMAEAVARIGAFLKRG

Sequences:

>Translated_393_residues
MAAAPLPRSIALSRRSAVEPFIVMDVMEHAARIEAGGGHVIHLEVGQPAAPAPTVARRAAAAALEAGQVGYTAALGIPAL
RARIARHYGEIHGVAVDPERVVVTHGSSGGFVLAFLALFEPGDRVAIAAPGYPPYRHVLHALGCEPVLIETRAEDRHALT
PERLLEAHRKAPLKGVLVASPANPTGTMMDRAALTALHACARDLNLAFISDEIYHGLDYAFPAVSAVEIGEDVTVINSFS
KYFCMTGWRVGWMVVPPGVSRTMERLQQNLSISVPTLSQIAADAAFEGRAEMDLVKATYVENRRILTEGLPQAGLKRFLP
ADGAFYLYADVSEFTDDSAAFARRMLDAAHVATTPGVDFDPFHGHQFLRISYAGSAPDMAEAVARIGAFLKRG
>Mature_392_residues
AAAPLPRSIALSRRSAVEPFIVMDVMEHAARIEAGGGHVIHLEVGQPAAPAPTVARRAAAAALEAGQVGYTAALGIPALR
ARIARHYGEIHGVAVDPERVVVTHGSSGGFVLAFLALFEPGDRVAIAAPGYPPYRHVLHALGCEPVLIETRAEDRHALTP
ERLLEAHRKAPLKGVLVASPANPTGTMMDRAALTALHACARDLNLAFISDEIYHGLDYAFPAVSAVEIGEDVTVINSFSK
YFCMTGWRVGWMVVPPGVSRTMERLQQNLSISVPTLSQIAADAAFEGRAEMDLVKATYVENRRILTEGLPQAGLKRFLPA
DGAFYLYADVSEFTDDSAAFARRMLDAAHVATTPGVDFDPFHGHQFLRISYAGSAPDMAEAVARIGAFLKRG

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=320, Percent_Identity=27.8125, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI169881279, Length=320, Percent_Identity=27.8125, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI56713254, Length=323, Percent_Identity=26.9349845201238, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI56713256, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI4507369, Length=379, Percent_Identity=22.1635883905013, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI169881281, Length=253, Percent_Identity=24.5059288537549, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI1788722, Length=391, Percent_Identity=26.0869565217391, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1786816, Length=362, Percent_Identity=26.5193370165746, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790797, Length=283, Percent_Identity=27.208480565371, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788627, Length=249, Percent_Identity=28.5140562248996, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787710, Length=337, Percent_Identity=27.0029673590504, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567369, Length=336, Percent_Identity=24.702380952381, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71994476, Length=263, Percent_Identity=29.277566539924, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994472, Length=261, Percent_Identity=29.8850574712644, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17567663, Length=375, Percent_Identity=25.0666666666667, Blast_Score=82, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322401, Length=317, Percent_Identity=24.2902208201893, Blast_Score=89, Evalue=8e-19,
Organism=Drosophila melanogaster, GI18859735, Length=394, Percent_Identity=26.1421319796954, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI28573069, Length=284, Percent_Identity=22.5352112676056, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24646114, Length=284, Percent_Identity=22.5352112676056, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28573067, Length=284, Percent_Identity=22.5352112676056, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28573065, Length=284, Percent_Identity=22.5352112676056, Blast_Score=75, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42074; Mature: 41942

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAPLPRSIALSRRSAVEPFIVMDVMEHAARIEAGGGHVIHLEVGQPAAPAPTVARRAA
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHHHHHH
AAALEAGQVGYTAALGIPALRARIARHYGEIHGVAVDPERVVVTHGSSGGFVLAFLALFE
HHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCHHHHHHHHHC
PGDRVAIAAPGYPPYRHVLHALGCEPVLIETRAEDRHALTPERLLEAHRKAPLKGVLVAS
CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
PANPTGTMMDRAALTALHACARDLNLAFISDEIYHGLDYAFPAVSAVEIGEDVTVINSFS
CCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHCCHHHHCCCHHHHCCCCCHHHHHHH
KYFCMTGWRVGWMVVPPGVSRTMERLQQNLSISVPTLSQIAADAAFEGRAEMDLVKATYV
HHHHHCCCEEEEEEECCCHHHHHHHHHHCCEECCCHHHHHHHHHHCCCCCHHHHHHHHHH
ENRRILTEGLPQAGLKRFLPADGAFYLYADVSEFTDDSAAFARRMLDAAHVATTPGVDFD
CCCCHHHCCCCHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
PFHGHQFLRISYAGSAPDMAEAVARIGAFLKRG
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAAPLPRSIALSRRSAVEPFIVMDVMEHAARIEAGGGHVIHLEVGQPAAPAPTVARRAA
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHHHHHH
AAALEAGQVGYTAALGIPALRARIARHYGEIHGVAVDPERVVVTHGSSGGFVLAFLALFE
HHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCHHHHHHHHHC
PGDRVAIAAPGYPPYRHVLHALGCEPVLIETRAEDRHALTPERLLEAHRKAPLKGVLVAS
CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
PANPTGTMMDRAALTALHACARDLNLAFISDEIYHGLDYAFPAVSAVEIGEDVTVINSFS
CCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHCCHHHHCCCHHHHCCCCCHHHHHHH
KYFCMTGWRVGWMVVPPGVSRTMERLQQNLSISVPTLSQIAADAAFEGRAEMDLVKATYV
HHHHHCCCEEEEEEECCCHHHHHHHHHHCCEECCCHHHHHHHHHHCCCCCHHHHHHHHHH
ENRRILTEGLPQAGLKRFLPADGAFYLYADVSEFTDDSAAFARRMLDAAHVATTPGVDFD
CCCCHHHCCCCHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
PFHGHQFLRISYAGSAPDMAEAVARIGAFLKRG
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]