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The map label for this gene is intZ [H]

Identifier: 154247372

GI number: 154247372

Start: 3832247

End: 3833452

Strand: Reverse

Name: intZ [H]

Synonym: Xaut_3444

Alternate gene names: 154247372

Gene position: 3833452-3832247 (Counterclockwise)

Preceding gene: 154247375

Following gene: 154247371

Centisome position: 72.21

GC content: 64.76

Gene sequence:

>1206_bases
ATGCCCCTCACCGACACTGCCGCCAGAAGTGCGAAGGGGCGCGAGAAGCCGTACAAACTCGCGGACGGTGGCGGCCTGTA
TCTACTCGTGAACCCCGATGGGGCACGCTACTGGCGCCTCAATTATCGCTTTGCTGGAAAGCAGAAGACCCTCGCTCTGG
GCACCTACCCCATCACGTCGCTCGCCGACGCCAGGAAGGGCCGCGAGACTGCAAAGGAGCAGTTGGCAGCGCGGATCGAT
CCCAGCGAAGCACGAAGGGCCGAAAAGCGGGCAGCTCGCCTTCACTCCAGCCGGATATTCGAGGTCGTCGCGCAGGAGTG
GTTCGCCGCGAAGCTGCCGGGATGGGTTCCCTCCTACTCAGATCGGCTCTTGAGCCGGCTGGAGGCCGACATTTATCCCA
CCTTGGGACATCGCCCAATCGCGGACATCGAGCCGCCTGAGGTGCTGGAGGTCATTCGCAAGGTGGAGACCCGTGGCGCC
ATCGAGCTGGCGAAGCGCGAGATGCAGGTCATCGGGCAGATCTTCCATTTTGCCATCGCCAGCGGTCGGGCCAAACGGGA
CCCTACGCAGGACCTGCGCGGAGCACTGAAATCGCCGGGCAGGCAGAAGCACCACCGCGCTCTGCCCCGTGAGGATCTGC
CGGACTTCCTCAAAGCCCTGGACGCCTACGACGGCGAGCCCATGACAAAGCTCGCCCTGAAGCTGATGGTCCTCACTTTC
GTGCGCACTACCGAGCTGCGCGCCGCGCGCTGGTCCGAGTTCGAAGGGCTGGACGGCCCCGAGCCGCTGTGGCGCATCCC
GCCCGAACGCATGAAAATGAGGTTCGAGCACCTCGTGCCGCTTTCTCCGCAAGCCGTCGCCGTGCTGCAGGAACTTCGCC
CCCTCGCTGGCCGCAGCCCTCAGCTTTTCCCCTCCCCCAGCAAGGAGGGCTTCATGTCGAACAACACGATGCTCTTCGCC
ATGTACCGCATGGGCTACCACGGCCGCGCGACGGTCCATGGCTTTCGCGGCGTGGCGTCCACCTGGCTGAACGAGGCTGG
CTACCATCCGGACTGGATCGAGCGGCAGCTCGCGCATGACGAACGGAACGAGGTCCGCGGCGCCTACAACAGCGCACAAT
ACCTCACGGGGCGCCGGCAGATGATGTGCGACTGGGCGAATTTCCTGGATGGCCTGAGGCGAGGCGCTTCCAATACAGGG
GCGTAG

Upstream 100 bases:

>100_bases
ATCAAGCCATCGCCTGAGTTCGCTTGGGTTCGTTGGCATCCGGGAAATTTGTTGGTAGTTTTGGGGGATCGGTTTGCCCT
ACCCTTTTTGAGATACCAAC

Downstream 100 bases:

>100_bases
AGCGCTCTGCTTTCCAAAGCCACCGGGGGAGGCGAACGCTTGCGAACACCCCCGAATGACGGCAAATTTGGGCGAACAAA
GGTTGAACATTGATCTGAGG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MPLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITSLADARKGRETAKEQLAARID
PSEARRAEKRAARLHSSRIFEVVAQEWFAAKLPGWVPSYSDRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGA
IELAKREMQVIGQIFHFAIASGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTF
VRTTELRAARWSEFEGLDGPEPLWRIPPERMKMRFEHLVPLSPQAVAVLQELRPLAGRSPQLFPSPSKEGFMSNNTMLFA
MYRMGYHGRATVHGFRGVASTWLNEAGYHPDWIERQLAHDERNEVRGAYNSAQYLTGRRQMMCDWANFLDGLRRGASNTG
A

Sequences:

>Translated_401_residues
MPLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITSLADARKGRETAKEQLAARID
PSEARRAEKRAARLHSSRIFEVVAQEWFAAKLPGWVPSYSDRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGA
IELAKREMQVIGQIFHFAIASGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTF
VRTTELRAARWSEFEGLDGPEPLWRIPPERMKMRFEHLVPLSPQAVAVLQELRPLAGRSPQLFPSPSKEGFMSNNTMLFA
MYRMGYHGRATVHGFRGVASTWLNEAGYHPDWIERQLAHDERNEVRGAYNSAQYLTGRRQMMCDWANFLDGLRRGASNTG
A
>Mature_400_residues
PLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITSLADARKGRETAKEQLAARIDP
SEARRAEKRAARLHSSRIFEVVAQEWFAAKLPGWVPSYSDRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGAI
ELAKREMQVIGQIFHFAIASGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTFV
RTTELRAARWSEFEGLDGPEPLWRIPPERMKMRFEHLVPLSPQAVAVLQELRPLAGRSPQLFPSPSKEGFMSNNTMLFAM
YRMGYHGRATVHGFRGVASTWLNEAGYHPDWIERQLAHDERNEVRGAYNSAQYLTGRRQMMCDWANFLDGLRRGASNTGA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=402, Percent_Identity=40.7960199004975, Blast_Score=272, Evalue=3e-74,
Organism=Escherichia coli, GI1788690, Length=397, Percent_Identity=37.7833753148615, Blast_Score=253, Evalue=1e-68,
Organism=Escherichia coli, GI1788974, Length=398, Percent_Identity=35.678391959799, Blast_Score=238, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45386; Mature: 45254

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITS
CCCCCHHHHHCCCCCCCCEEECCCCEEEEECCCCCEEEEEEEEECCCCCEEEEECCCHHH
LADARKGRETAKEQLAARIDPSEARRAEKRAARLHSSRIFEVVAQEWFAAKLPGWVPSYS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
DRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGAIELAKREMQVIGQIFHFAIA
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
SGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTF
CCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VRTTELRAARWSEFEGLDGPEPLWRIPPERMKMRFEHLVPLSPQAVAVLQELRPLAGRSP
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
QLFPSPSKEGFMSNNTMLFAMYRMGYHGRATVHGFRGVASTWLNEAGYHPDWIERQLAHD
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ERNEVRGAYNSAQYLTGRRQMMCDWANFLDGLRRGASNTGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITS
CCCCHHHHHCCCCCCCCEEECCCCEEEEECCCCCEEEEEEEEECCCCCEEEEECCCHHH
LADARKGRETAKEQLAARIDPSEARRAEKRAARLHSSRIFEVVAQEWFAAKLPGWVPSYS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
DRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGAIELAKREMQVIGQIFHFAIA
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
SGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTF
CCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VRTTELRAARWSEFEGLDGPEPLWRIPPERMKMRFEHLVPLSPQAVAVLQELRPLAGRSP
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
QLFPSPSKEGFMSNNTMLFAMYRMGYHGRATVHGFRGVASTWLNEAGYHPDWIERQLAHD
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ERNEVRGAYNSAQYLTGRRQMMCDWANFLDGLRRGASNTGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]