Click here to switch to the map view.

The map label for this gene is erfK [H]

Identifier: 154247143

GI number: 154247143

Start: 3562124

End: 3562717

Strand: Reverse

Name: erfK [H]

Synonym: Xaut_3215

Alternate gene names: 154247143

Gene position: 3562717-3562124 (Counterclockwise)

Preceding gene: 154247144

Following gene: 154247138

Centisome position: 67.11

GC content: 66.67

Gene sequence:

>594_bases
ATGACGCACTTCAGATCCCTCGCCCTGGCCGCCGTCGCGGCCGCGATCGTGGCGGCGGGGCCGGCGCGAGCCGACGACCG
CTACGACATCTTCAACTTCAACAAGCTGTTCAGCGGCGCCAACGTCAATGACGGCTACGTGGGCACCTCCTCGCCCATTG
GCCGGCAGATGGTCTCCATCGATCCGAAATATGCGCCGGGCACCATCGTGATCCGCACATCCGAGCGACGGCTTTATTAC
GTTACCTCCCGAGGCGAGGCCCTGCGCTACGGCGTCGGGGTGGGCCGCGAAGGCTTCCAGTGGTCCGGCGTGAAGACCGT
GAGCGCGAAGAAGGAATGGCCGGGCTGGACGCCGCCCGCGCAGATGCTGAGGCGCCGGCCCGATCTGCCGCGCTACATGC
CGGGGGGCATTGAAAATCCGCTGGGTGCCCGCGCCATGTATCTCGGCTCCAGCCTCTACCGCATCCACGGCTCCAACGAG
CCGGAGACCATCGGCCAGGCGGTCTCTTCCGGCTGCTTCCGCATGACCAACGACGATGTGGTGGACCTCTACAACCGCGT
CCGCGTGGGCACCACGGTCTACGTGCTGCGCTGA

Upstream 100 bases:

>100_bases
CGGTTGCAGTCATGTCCATTTTACGGCGACAAAATGGACGGCCGGAGCACAATTCGCTCCCCGTGTGTCCCCTTCGTTCC
TCAGCCGAGACGTAAGACCC

Downstream 100 bases:

>100_bases
GCACGGCGATCGATCGAGCCCGGCTCCAAACGCGAAAAACCCCGGCCACCTTGCGGTGACCGGGGTTTCTTAATTCAGAG
CGTCAGCTCAGAGAGCGGCG

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTHFRSLALAAVAAAIVAAGPARADDRYDIFNFNKLFSGANVNDGYVGTSSPIGRQMVSIDPKYAPGTIVIRTSERRLYY
VTSRGEALRYGVGVGREGFQWSGVKTVSAKKEWPGWTPPAQMLRRRPDLPRYMPGGIENPLGARAMYLGSSLYRIHGSNE
PETIGQAVSSGCFRMTNDDVVDLYNRVRVGTTVYVLR

Sequences:

>Translated_197_residues
MTHFRSLALAAVAAAIVAAGPARADDRYDIFNFNKLFSGANVNDGYVGTSSPIGRQMVSIDPKYAPGTIVIRTSERRLYY
VTSRGEALRYGVGVGREGFQWSGVKTVSAKKEWPGWTPPAQMLRRRPDLPRYMPGGIENPLGARAMYLGSSLYRIHGSNE
PETIGQAVSSGCFRMTNDDVVDLYNRVRVGTTVYVLR
>Mature_196_residues
THFRSLALAAVAAAIVAAGPARADDRYDIFNFNKLFSGANVNDGYVGTSSPIGRQMVSIDPKYAPGTIVIRTSERRLYYV
TSRGEALRYGVGVGREGFQWSGVKTVSAKKEWPGWTPPAQMLRRRPDLPRYMPGGIENPLGARAMYLGSSLYRIHGSNEP
ETIGQAVSSGCFRMTNDDVVDLYNRVRVGTTVYVLR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=167, Percent_Identity=37.125748502994, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1787356, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1787968, Length=136, Percent_Identity=38.2352941176471, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787040, Length=158, Percent_Identity=36.0759493670886, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 21684; Mature: 21553

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHFRSLALAAVAAAIVAAGPARADDRYDIFNFNKLFSGANVNDGYVGTSSPIGRQMVSI
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCEEEEC
DPKYAPGTIVIRTSERRLYYVTSRGEALRYGVGVGREGFQWSGVKTVSAKKEWPGWTPPA
CCCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCEECCEEEECCCCCCCCCCCHH
QMLRRRPDLPRYMPGGIENPLGARAMYLGSSLYRIHGSNEPETIGQAVSSGCFRMTNDDV
HHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECCCCHHHHHHHHHCCCEECCCCHH
VDLYNRVRVGTTVYVLR
HHHHHHHCCCEEEEEEC
>Mature Secondary Structure 
THFRSLALAAVAAAIVAAGPARADDRYDIFNFNKLFSGANVNDGYVGTSSPIGRQMVSI
CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCEEEEC
DPKYAPGTIVIRTSERRLYYVTSRGEALRYGVGVGREGFQWSGVKTVSAKKEWPGWTPPA
CCCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCEECCEEEECCCCCCCCCCCHH
QMLRRRPDLPRYMPGGIENPLGARAMYLGSSLYRIHGSNEPETIGQAVSSGCFRMTNDDV
HHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECCCCHHHHHHHHHCCCEECCCCHH
VDLYNRVRVGTTVYVLR
HHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]