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The map label for this gene is ygcF [C]

Identifier: 154247119

GI number: 154247119

Start: 3538318

End: 3538953

Strand: Direct

Name: ygcF [C]

Synonym: Xaut_3190

Alternate gene names: 154247119

Gene position: 3538318-3538953 (Clockwise)

Preceding gene: 154247118

Following gene: 154247120

Centisome position: 66.65

GC content: 68.08

Gene sequence:

>636_bases
ATGGCCTATGCTGTCAAAGAAATGTTCCTCACCCTCCAGGGCGAGGGCGCCCAGGCGGGGCGCGCGGCGGTGTTCTGCCG
GTTTGCGGGCTGCAATCTGTGGTCCGGCCGGGAGGACGACCGCGCGGAAGCCCAATGCCGCTTCTGCGACACCGACTTCG
TCGGCATGGACGGGGAAGGCGGCGGCCGCTTCGCTGACGCCGCCACGTTGGCCGCCGCCATCGCCGCTACCTGGGGTTCT
GCCGCGCCCGAGCGCCGCTTCGTGGTCTTCACCGGCGGCGAGCCGTTGCTCCAGCTCGACACGGCGCTGGTGGATGCGGT
CCACGCCCTCGGCTTCGAGATCGCGGTGGAGACCAACGGCACCGTGGACGCGCCGGGCGGCATCGACTGGATCTGCATGA
GCCCCAAGGCCGGTACAGACCTCAAGGTCACGCGCGGCCATGAGCTGAAGCTGGTCTTCCCGCAACCGGGGCTTGCCCCA
GAGGGCTTGGCGGGGCTCGATTTCACCCATTTCTTCCTGCAGCCCATGGACGGACCGGACCGCCTGCGCAATACCGAGGC
GGCGGTGGCTTATTGCCTCTCGCACCCGCGCTGGCGGCTGTCCCTCCAGACCCACAAGATGATTGGTATTCCATGA

Upstream 100 bases:

>100_bases
CGACGCGGCCGCGCCGGCTCCCGCCGCGCAATAGGCGCGGGCCTGCCGGGCGCCGCGGCGGCTTCCCCCCCGCGCGCCTT
CGGGCTAAAGGCATCGGCCC

Downstream 100 bases:

>100_bases
GTTCGAGCGCCACCCCGGTGCCGCGGCGCGCGCGCATCACCCAGGGCTTCACCTTCGAGGCCGCCCATTTCCTGCCGCAC
GTGCCGGAAACCCACCGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Organic Radical Activating; Radical SAM Domain Protein; Organic Radical Activating-Like Protein; Queuosine Biosynthesis Protein QueE; Radical Sam Domain Protein; Organic Radical Activating Protein; Organic Radical Activating Protein; Radical SAM; Radical SAM Superfamily Protein; GntS Family Protein; Radical SAM Superfamily

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAYAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGGRFADAATLAAAIAATWGS
AAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTVDAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAP
EGLAGLDFTHFFLQPMDGPDRLRNTEAAVAYCLSHPRWRLSLQTHKMIGIP

Sequences:

>Translated_211_residues
MAYAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGGRFADAATLAAAIAATWGS
AAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTVDAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAP
EGLAGLDFTHFFLQPMDGPDRLRNTEAAVAYCLSHPRWRLSLQTHKMIGIP
>Mature_210_residues
AYAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEGGGRFADAATLAAAIAATWGSA
APERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNGTVDAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPE
GLAGLDFTHFFLQPMDGPDRLRNTEAAVAYCLSHPRWRLSLQTHKMIGIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789139, Length=240, Percent_Identity=28.3333333333333, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22617; Mature: 22486

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEG
CCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEECCCCCC
GGRFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNG
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCC
TVDAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPD
CEECCCCEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHH
RLRNTEAAVAYCLSHPRWRLSLQTHKMIGIP
HHCCHHHHHHHHHCCCCEEEEEEECEEECCC
>Mature Secondary Structure 
AYAVKEMFLTLQGEGAQAGRAAVFCRFAGCNLWSGREDDRAEAQCRFCDTDFVGMDGEG
CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEECCCCCC
GGRFADAATLAAAIAATWGSAAPERRFVVFTGGEPLLQLDTALVDAVHALGFEIAVETNG
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCC
TVDAPGGIDWICMSPKAGTDLKVTRGHELKLVFPQPGLAPEGLAGLDFTHFFLQPMDGPD
CEECCCCEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHH
RLRNTEAAVAYCLSHPRWRLSLQTHKMIGIP
HHCCHHHHHHHHHCCCCEEEEEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA