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The map label for this gene is comF [H]

Identifier: 154247019

GI number: 154247019

Start: 3430469

End: 3431236

Strand: Reverse

Name: comF [H]

Synonym: Xaut_3090

Alternate gene names: 154247019

Gene position: 3431236-3430469 (Counterclockwise)

Preceding gene: 154247020

Following gene: 154247018

Centisome position: 64.63

GC content: 72.27

Gene sequence:

>768_bases
ATGGCCGACATGTCCTTGAAGTTCGCACAGGCGCGCGGCGCGCTGCGGGCCTTCGGCTCGGGGCTGCTGGGGCTTGCCCT
GCCGCCCACCTGCATCGCCTGCGGCGGCATCACCGGAATGGCGGGCGGCCTGTGCGGCCCGTGCTGGGGCAAGCTCGCCT
TCATCAGCCGGCCGTTCTGCGAGCGCACCGGCGCGCCCTTCACCCACGATCCCGGTGGCGCGCGAATCTCGGCGCAGGCG
CTGGACGATCCTCCGGCCTTCGACCGCGCCCGTGCCGCAGTGACCTTCAACGACGTGGCCCGCGACCTCGTCCACAAGCT
GAAATATGCCGACCGGCTGGATGTCGCCGCACCGCTGGCCCGGCTGATGGCCCAGGCTGGCGCGGATGTGATCGCCTCCG
CCGACATCATCGTGCCGGTGCCGCTGCATCCGTTCCGCCTGTGGCGCCGCCGCTTCAACCAGGCGGCGCTGCTCGGCCGG
CACCTGGCGGCGGCCACCGCCATCCCCCAGCGCACCGACCTGCTCGCCCGGCGCCGCTCGACCCCCTCGCAGACGGCGCT
GGGCCGGGCGGAACGCCGCGCCAACGTGGCCGGCGCCTTCGCCGCATGCGGCAATGCAGCATCCCATCTTGAGGGCCGGC
GCGTGCTGCTGGTGGATGACGTATTCACCACCGGCGCCACGCTGGATGCCTGCGCACAAGCCCTGCGTCGGGCGGGGGCC
ATCCAGGTGGATGCCCTGACATTTGCGCGGGTTGTCGATTTCGCCTGA

Upstream 100 bases:

>100_bases
CGTTATCACCAATGCCCTGCTGCTACGCGGCTGGCGCCCGCGCTGAGGGGCGCACCTTTACACCCGCGCCGTGCCCGCCG
ATCATGGCGCGGGATCGCAC

Downstream 100 bases:

>100_bases
AAACCCTAACTATGGTACGACGCTTTCGTGACGGTGCCCCGCCGTCCCGCAACCCATTTGTGACACCATGAAACCCATCG
AGATCTATACCAAGAGCTGG

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MADMSLKFAQARGALRAFGSGLLGLALPPTCIACGGITGMAGGLCGPCWGKLAFISRPFCERTGAPFTHDPGGARISAQA
LDDPPAFDRARAAVTFNDVARDLVHKLKYADRLDVAAPLARLMAQAGADVIASADIIVPVPLHPFRLWRRRFNQAALLGR
HLAAATAIPQRTDLLARRRSTPSQTALGRAERRANVAGAFAACGNAASHLEGRRVLLVDDVFTTGATLDACAQALRRAGA
IQVDALTFARVVDFA

Sequences:

>Translated_255_residues
MADMSLKFAQARGALRAFGSGLLGLALPPTCIACGGITGMAGGLCGPCWGKLAFISRPFCERTGAPFTHDPGGARISAQA
LDDPPAFDRARAAVTFNDVARDLVHKLKYADRLDVAAPLARLMAQAGADVIASADIIVPVPLHPFRLWRRRFNQAALLGR
HLAAATAIPQRTDLLARRRSTPSQTALGRAERRANVAGAFAACGNAASHLEGRRVLLVDDVFTTGATLDACAQALRRAGA
IQVDALTFARVVDFA
>Mature_254_residues
ADMSLKFAQARGALRAFGSGLLGLALPPTCIACGGITGMAGGLCGPCWGKLAFISRPFCERTGAPFTHDPGGARISAQAL
DDPPAFDRARAAVTFNDVARDLVHKLKYADRLDVAAPLARLMAQAGADVIASADIIVPVPLHPFRLWRRRFNQAALLGRH
LAAATAIPQRTDLLARRRSTPSQTALGRAERRANVAGAFAACGNAASHLEGRRVLLVDDVFTTGATLDACAQALRRAGAI
QVDALTFARVVDFA

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26851; Mature: 26720

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADMSLKFAQARGALRAFGSGLLGLALPPTCIACGGITGMAGGLCGPCWGKLAFISRPFC
CCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCHH
ERTGAPFTHDPGGARISAQALDDPPAFDRARAAVTFNDVARDLVHKLKYADRLDVAAPLA
HHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RLMAQAGADVIASADIIVPVPLHPFRLWRRRFNQAALLGRHLAAATAIPQRTDLLARRRS
HHHHHHCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
TPSQTALGRAERRANVAGAFAACGNAASHLEGRRVLLVDDVFTTGATLDACAQALRRAGA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCHHCCCCHHHHHHHHHHCCC
IQVDALTFARVVDFA
EEEHHHHHHHHHCCC
>Mature Secondary Structure 
ADMSLKFAQARGALRAFGSGLLGLALPPTCIACGGITGMAGGLCGPCWGKLAFISRPFC
CCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCHH
ERTGAPFTHDPGGARISAQALDDPPAFDRARAAVTFNDVARDLVHKLKYADRLDVAAPLA
HHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RLMAQAGADVIASADIIVPVPLHPFRLWRRRFNQAALLGRHLAAATAIPQRTDLLARRRS
HHHHHHCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
TPSQTALGRAERRANVAGAFAACGNAASHLEGRRVLLVDDVFTTGATLDACAQALRRAGA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCHHCCCCHHHHHHHHHHCCC
IQVDALTFARVVDFA
EEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]