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The map label for this gene is ybgF [C]

Identifier: 154247010

GI number: 154247010

Start: 3420735

End: 3421658

Strand: Direct

Name: ybgF [C]

Synonym: Xaut_3081

Alternate gene names: 154247010

Gene position: 3420735-3421658 (Clockwise)

Preceding gene: 154247009

Following gene: 154247011

Centisome position: 64.43

GC content: 73.16

Gene sequence:

>924_bases
ATGATGCGCCTGCCGCTGGTCGGTGTTCTCGCCCTCGCCCTGAGCGCCGTCGCGCTGCCCGCCGCTGCCCAGCAGGACGG
CGGATTGTTCGGCAATATCTTCAAGCCCCCGGCCGCGACGCCCCAGCCCGTGCAGGGCGGCGACGAGACCGAGCTGGTCG
GTCGCATGGAGCGGCTCGAATCCTCCCTGCGCCAGCTCACCGGGCAGGTGGAGCAGCTGCAGTACCGAAACCAGCAGCTT
GAGGCGCAGGTGCGCCGGCTGGAGGAAGGCTCCGGCGGTGCCCGGGCCCCGGCCGCGGCGGCCGCGCCTGGCGTGGCGCC
GGCGGCGACATTGCCTTCCGGTCGCCCGGCGACCGTGCCCGGCGCCTCCGGCAAGCGATCCGACGCCTTCGATCCCAATA
TGGACCCGGCCGCCCCCGGTGCGCCGCAGCCCCTGGGCTCGCCCGCCAGCGCCGCCTCGGCCCTGCCGCGCCCGGCTGAA
GCCGTTCCCGGCGGGCGGCCTGCGGGGGGCACGCAGGTGGCCGCGCTGCCAGGATCAGGCGGCTCCGTGCGCGAGCTGTA
CGACGCCGGCCAGGCCCAGCTCCAGCGCCAGGATTATGCCGGCGCAGAGCAGACCTTCCGGCAGATCATCCAGTCCGCGT
CCGGCGACCGCATCATTCCCGACGCCACCTTCATGCTCGGGGAGAGCCTGTTCCTGCGCCAGAATTACGGGGACGCGGCG
GCCTCCTTCCTGGAGGTCTCCACCAAATATCCCAATTCCACCCGCGCTCCCGAGGCGCTGCTGCGGCTCGGGCAGTCCCT
CGCCGGCCTCGGCGAGAAGGAGACCGCCTGCGCCACCCTTCAGGAGGTCGACCGCAAGTATCCGCGCGCCCCGTCCTCCA
TCCGCCAGGCGGTGGAGCGGGAACAGAAGCGCGTCGGCTGCTGA

Upstream 100 bases:

>100_bases
CCTTGCCGAGTCACACTTTGGACGTGATCCACCTCCTATTCTTGAGCGCTCGGGAGGCTGATCCCGGCCATCCTTCCCGC
CACAAGCCCTTGGACCCAAG

Downstream 100 bases:

>100_bases
GGCCGAATGACCCGGGTGGAGGCGCGGCGATGGACACGGGGGCGATCGATCTCCCGGAGAATTCCCCCATCGAGGACGGC
GCGCTCGATGCCCTGTTCGC

Product: Tol-Pal system YbgF

Products: NA

Alternate protein names: L-Pal System YbgF; TPR Repeat-Containing Protein; TPR Domain Protein; TPR RepeatMolluscan Rhodopsin C-Terminal Domain Protein; TPR Repeat Protein; L System Periplasmic Component YbgF; Tetratricopeptide TPR2 Protein

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MMRLPLVGVLALALSAVALPAAAQQDGGLFGNIFKPPAATPQPVQGGDETELVGRMERLESSLRQLTGQVEQLQYRNQQL
EAQVRRLEEGSGGARAPAAAAAPGVAPAATLPSGRPATVPGASGKRSDAFDPNMDPAAPGAPQPLGSPASAASALPRPAE
AVPGGRPAGGTQVAALPGSGGSVRELYDAGQAQLQRQDYAGAEQTFRQIIQSASGDRIIPDATFMLGESLFLRQNYGDAA
ASFLEVSTKYPNSTRAPEALLRLGQSLAGLGEKETACATLQEVDRKYPRAPSSIRQAVEREQKRVGC

Sequences:

>Translated_307_residues
MMRLPLVGVLALALSAVALPAAAQQDGGLFGNIFKPPAATPQPVQGGDETELVGRMERLESSLRQLTGQVEQLQYRNQQL
EAQVRRLEEGSGGARAPAAAAAPGVAPAATLPSGRPATVPGASGKRSDAFDPNMDPAAPGAPQPLGSPASAASALPRPAE
AVPGGRPAGGTQVAALPGSGGSVRELYDAGQAQLQRQDYAGAEQTFRQIIQSASGDRIIPDATFMLGESLFLRQNYGDAA
ASFLEVSTKYPNSTRAPEALLRLGQSLAGLGEKETACATLQEVDRKYPRAPSSIRQAVEREQKRVGC
>Mature_307_residues
MMRLPLVGVLALALSAVALPAAAQQDGGLFGNIFKPPAATPQPVQGGDETELVGRMERLESSLRQLTGQVEQLQYRNQQL
EAQVRRLEEGSGGARAPAAAAAPGVAPAATLPSGRPATVPGASGKRSDAFDPNMDPAAPGAPQPLGSPASAASALPRPAE
AVPGGRPAGGTQVAALPGSGGSVRELYDAGQAQLQRQDYAGAEQTFRQIIQSASGDRIIPDATFMLGESLFLRQNYGDAA
ASFLEVSTKYPNSTRAPEALLRLGQSLAGLGEKETACATLQEVDRKYPRAPSSIRQAVEREQKRVGC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31829; Mature: 31829

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLPLVGVLALALSAVALPAAAQQDGGLFGNIFKPPAATPQPVQGGDETELVGRMERLE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SSLRQLTGQVEQLQYRNQQLEAQVRRLEEGSGGARAPAAAAAPGVAPAATLPSGRPATVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
GASGKRSDAFDPNMDPAAPGAPQPLGSPASAASALPRPAEAVPGGRPAGGTQVAALPGSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCC
GSVRELYDAGQAQLQRQDYAGAEQTFRQIIQSASGDRIIPDATFMLGESLFLRQNYGDAA
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCHHHHHCCHHHHHCCCCHHH
ASFLEVSTKYPNSTRAPEALLRLGQSLAGLGEKETACATLQEVDRKYPRAPSSIRQAVER
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EQKRVGC
HHHHCCC
>Mature Secondary Structure
MMRLPLVGVLALALSAVALPAAAQQDGGLFGNIFKPPAATPQPVQGGDETELVGRMERLE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SSLRQLTGQVEQLQYRNQQLEAQVRRLEEGSGGARAPAAAAAPGVAPAATLPSGRPATVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
GASGKRSDAFDPNMDPAAPGAPQPLGSPASAASALPRPAEAVPGGRPAGGTQVAALPGSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCC
GSVRELYDAGQAQLQRQDYAGAEQTFRQIIQSASGDRIIPDATFMLGESLFLRQNYGDAA
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCHHHHHCCHHHHHCCCCHHH
ASFLEVSTKYPNSTRAPEALLRLGQSLAGLGEKETACATLQEVDRKYPRAPSSIRQAVER
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EQKRVGC
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA