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The map label for this gene is yubM [H]

Identifier: 154246960

GI number: 154246960

Start: 3365888

End: 3368026

Strand: Reverse

Name: yubM [H]

Synonym: Xaut_3031

Alternate gene names: 154246960

Gene position: 3368026-3365888 (Counterclockwise)

Preceding gene: 154246961

Following gene: 154246959

Centisome position: 63.44

GC content: 69.14

Gene sequence:

>2139_bases
ATGGCGACTGCCATTCAGAAGATCACCCTGTCGTCGGCGCACGACATCCCCTTCAACAAGCTGGTGCTGAGCCAGTCCAA
CGTCCGGCGCGTCAAGGCCGGCGTCTCGATCGAGGAGCTGGCCCAGTCCATCGCCCGGCGCGGCCTGATCCAGAGCCTGC
ATGTCCGTCCCGTCCTCGACGCCGATGGCGCCGAAACCGGGATCTTCGAGGTGCCCGCCGGCGGCCGCCGCTATCGCGCG
CTCGAATTGCTGGTGAAGCAGAAGCGTCTGGCCAAGACCGCGCCGGTGCCCTGCGTCGTCGGCGACGCCAACAGCGGCAT
CCTGGTCGATGAGGTCTCGCTGGTCGAGAACATCGAACGCGCGCCGCTGCATCCGCTCGATCAGTTCCGCGCCTTCCAGG
CCATGCGCGAGAAGGGCATGACCGAGGAAGCCATCGCCGCCGCCTTCTTCGTCGGCGTCAATATCGTGAAGCAGCGCCTG
CGCCTCGCTTCCGTCTCGCCGGTATTGCTCGAGATCTACGCCGACGACGGCATGACGCTCGAGCAGCTCATGGCCTTCAC
CGTCAGTTCCGACCATGCACGCCAGGAGCAGGTCTGGGACGCGATCAAGGATGGCTGGCAGAAAGAGCCCTATCACATCC
GCCGGATGCTGACCGAGACCACGGTGCGGGCTTCCGACAGGCGGGCCGTCTTCGTGGGCGTCGAAGCCTATGAAGCGGCC
GGCGGCATCGTGTTGCGCGACCTCTTCCAGTCCGACGACGGCGGCTGGCTGCAAGACCCGGCCCTGCTCGACCGCCTGGT
GGCCGAGAAGCTCAAGACCGCCGCCGACGAGATCGCGGGCGAAGGCTGGAAGTGGGTCGAGGCCGCCCTGAGCTTTCCCT
ACGGCCACGAGCACGGGCTTCGGGAGCTTGCCGGAACGGCGGTCGACCTGACCGACGAGGAGCGCGCCACTCGCGAGGCG
CTGCGTGACGAGTATGACCGGCTCGAGGCCGAATATGCCGAAGCCGACGAGCTGCCAGACGAGATCGACGCGCGTCTCGG
AGAGATCGAGCAGGCGCTCGACGCCTTCGAGCAGCGCCCGGCGATCTACGATCCGGCCGACATCCCCACCGCCGGCGTCT
TCGTCAGCCTCGACGCCGACGGCTCGCTGTCGGTCGACCGTGGCTATGTCCGCCCCGAGGACGAGCGCCCGGTCGCCCCC
GAAGGAGACGACACGACGGAGACGGACGGCGACACCGGCCATTCGGCCACGCCCGCCGTTCAACGCGCCGTCGTCACCGT
CGGCGGCCAGGCCGCGGAGCCGGAAGACGACGAGGAGGACGGCATCAAGCCGCTGCCCGAGCGCCTCGTCATCGAGCTGA
CCGCGCATCGCACGCTGGCGCTGCGTAACGCGCTCGCCGAGCATCCCGACGTCGCCATGACCATGCTGCTGCACAAGCTG
GTCAGCGATACCTTCCGGCGACCCGCGCCGACGGGCTGCCTCGAGGCCAGCGTCCGCCACGTCTTCTTCTCCGCCCAACC
GGAGGAGCTGAAGGACAGCGGCACGGCGCACGAGATCGCCGAGCGGCACGGGCGCTGGGGCGATCACGTTCCCGCCGACG
ACCAGGCGCTGTGGGACTGGCTCACCGATCTCGATCCGGGCACGCGCCTCGATCTGCTCGCCCATTGCGTCAGCTTCGGC
GTGAACGCGCTGTTCGAGCGGCCGAACCCCTACGGATCGGGCGTCAGCCAGCATGGGCTGGATGTCCGCCTCGCCCAGGC
CGACCGGCTGGCGCGCGCCACTGGCCTCGACATGGTGGCGGCGGGCTGGCGGCCGACGGTCGGCAACTATCTCGGCCGCG
TCACCAAGCCCCGCATCCTCGAAGCCGTCCGGGAGGGCGCCGGCGAACGGGCCGCCCAACTCATCGACCATCTGAAGAAG
GGCGACATGGCCAAGGAGGCCGAGCGCCTGCTGGCCGACACCGCCTGGCTGCCCGAGCCGCTGCGCCTGATCGATCCCCA
TGACGGGGAGGTCATCGAACCGGGCGCGGAGGCCGACGCCGACGAAGAGGCCGCCTTGCCGGCCTTCCTCAGCGAGGACG
GCGACGAGGATGCCGAAGAGATCGAGGACGAGGACGCCCTGACGATCGCTGCCGAATGA

Upstream 100 bases:

>100_bases
CCGGCGCGGCCCTCCTGAGAGTGAGAGGGCTGCGCTTCGCTTCGTGACGGGTCGGAGGTCGAGAGAGAGGCTCTCGGCCG
CCCGTCGCGGAGTAACGATC

Downstream 100 bases:

>100_bases
CCCTCACGGCGGGGGAGCGGCGAGAGGTCGCTTCCCCGCATCTTCGCAAGGAGACCTTCCATGATTGAACCCGACCCGTC
GGCCACGCGCCGCGTCGTCT

Product: nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 711

Protein sequence:

>712_residues
MATAIQKITLSSAHDIPFNKLVLSQSNVRRVKAGVSIEELAQSIARRGLIQSLHVRPVLDADGAETGIFEVPAGGRRYRA
LELLVKQKRLAKTAPVPCVVGDANSGILVDEVSLVENIERAPLHPLDQFRAFQAMREKGMTEEAIAAAFFVGVNIVKQRL
RLASVSPVLLEIYADDGMTLEQLMAFTVSSDHARQEQVWDAIKDGWQKEPYHIRRMLTETTVRASDRRAVFVGVEAYEAA
GGIVLRDLFQSDDGGWLQDPALLDRLVAEKLKTAADEIAGEGWKWVEAALSFPYGHEHGLRELAGTAVDLTDEERATREA
LRDEYDRLEAEYAEADELPDEIDARLGEIEQALDAFEQRPAIYDPADIPTAGVFVSLDADGSLSVDRGYVRPEDERPVAP
EGDDTTETDGDTGHSATPAVQRAVVTVGGQAAEPEDDEEDGIKPLPERLVIELTAHRTLALRNALAEHPDVAMTMLLHKL
VSDTFRRPAPTGCLEASVRHVFFSAQPEELKDSGTAHEIAERHGRWGDHVPADDQALWDWLTDLDPGTRLDLLAHCVSFG
VNALFERPNPYGSGVSQHGLDVRLAQADRLARATGLDMVAAGWRPTVGNYLGRVTKPRILEAVREGAGERAAQLIDHLKK
GDMAKEAERLLADTAWLPEPLRLIDPHDGEVIEPGAEADADEEAALPAFLSEDGDEDAEEIEDEDALTIAAE

Sequences:

>Translated_712_residues
MATAIQKITLSSAHDIPFNKLVLSQSNVRRVKAGVSIEELAQSIARRGLIQSLHVRPVLDADGAETGIFEVPAGGRRYRA
LELLVKQKRLAKTAPVPCVVGDANSGILVDEVSLVENIERAPLHPLDQFRAFQAMREKGMTEEAIAAAFFVGVNIVKQRL
RLASVSPVLLEIYADDGMTLEQLMAFTVSSDHARQEQVWDAIKDGWQKEPYHIRRMLTETTVRASDRRAVFVGVEAYEAA
GGIVLRDLFQSDDGGWLQDPALLDRLVAEKLKTAADEIAGEGWKWVEAALSFPYGHEHGLRELAGTAVDLTDEERATREA
LRDEYDRLEAEYAEADELPDEIDARLGEIEQALDAFEQRPAIYDPADIPTAGVFVSLDADGSLSVDRGYVRPEDERPVAP
EGDDTTETDGDTGHSATPAVQRAVVTVGGQAAEPEDDEEDGIKPLPERLVIELTAHRTLALRNALAEHPDVAMTMLLHKL
VSDTFRRPAPTGCLEASVRHVFFSAQPEELKDSGTAHEIAERHGRWGDHVPADDQALWDWLTDLDPGTRLDLLAHCVSFG
VNALFERPNPYGSGVSQHGLDVRLAQADRLARATGLDMVAAGWRPTVGNYLGRVTKPRILEAVREGAGERAAQLIDHLKK
GDMAKEAERLLADTAWLPEPLRLIDPHDGEVIEPGAEADADEEAALPAFLSEDGDEDAEEIEDEDALTIAAE
>Mature_711_residues
ATAIQKITLSSAHDIPFNKLVLSQSNVRRVKAGVSIEELAQSIARRGLIQSLHVRPVLDADGAETGIFEVPAGGRRYRAL
ELLVKQKRLAKTAPVPCVVGDANSGILVDEVSLVENIERAPLHPLDQFRAFQAMREKGMTEEAIAAAFFVGVNIVKQRLR
LASVSPVLLEIYADDGMTLEQLMAFTVSSDHARQEQVWDAIKDGWQKEPYHIRRMLTETTVRASDRRAVFVGVEAYEAAG
GIVLRDLFQSDDGGWLQDPALLDRLVAEKLKTAADEIAGEGWKWVEAALSFPYGHEHGLRELAGTAVDLTDEERATREAL
RDEYDRLEAEYAEADELPDEIDARLGEIEQALDAFEQRPAIYDPADIPTAGVFVSLDADGSLSVDRGYVRPEDERPVAPE
GDDTTETDGDTGHSATPAVQRAVVTVGGQAAEPEDDEEDGIKPLPERLVIELTAHRTLALRNALAEHPDVAMTMLLHKLV
SDTFRRPAPTGCLEASVRHVFFSAQPEELKDSGTAHEIAERHGRWGDHVPADDQALWDWLTDLDPGTRLDLLAHCVSFGV
NALFERPNPYGSGVSQHGLDVRLAQADRLARATGLDMVAAGWRPTVGNYLGRVTKPRILEAVREGAGERAAQLIDHLKKG
DMAKEAERLLADTAWLPEPLRLIDPHDGEVIEPGAEADADEEAALPAFLSEDGDEDAEEIEDEDALTIAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 77941; Mature: 77810

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAIQKITLSSAHDIPFNKLVLSQSNVRRVKAGVSIEELAQSIARRGLIQSLHVRPVLD
CCCHHHHHHHCCCCCCCHHHEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEC
ADGAETGIFEVPAGGRRYRALELLVKQKRLAKTAPVPCVVGDANSGILVDEVSLVENIER
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHHHHH
APLHPLDQFRAFQAMREKGMTEEAIAAAFFVGVNIVKQRLRLASVSPVLLEIYADDGMTL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
EQLMAFTVSSDHARQEQVWDAIKDGWQKEPYHIRRMLTETTVRASDRRAVFVGVEAYEAA
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
GGIVLRDLFQSDDGGWLQDPALLDRLVAEKLKTAADEIAGEGWKWVEAALSFPYGHEHGL
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHH
RELAGTAVDLTDEERATREALRDEYDRLEAEYAEADELPDEIDARLGEIEQALDAFEQRP
HHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
AIYDPADIPTAGVFVSLDADGSLSVDRGYVRPEDERPVAPEGDDTTETDGDTGHSATPAV
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QRAVVTVGGQAAEPEDDEEDGIKPLPERLVIELTAHRTLALRNALAEHPDVAMTMLLHKL
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VSDTFRRPAPTGCLEASVRHVFFSAQPEELKDSGTAHEIAERHGRWGDHVPADDQALWDW
HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHH
LTDLDPGTRLDLLAHCVSFGVNALFERPNPYGSGVSQHGLDVRLAQADRLARATGLDMVA
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCHHHH
AGWRPTVGNYLGRVTKPRILEAVREGAGERAAQLIDHLKKGDMAKEAERLLADTAWLPEP
CCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
LRLIDPHDGEVIEPGAEADADEEAALPAFLSEDGDEDAEEIEDEDALTIAAE
HHHCCCCCCCEECCCCCCCCCCHHCCCHHHCCCCCCHHHHCCCCCCEEEECC
>Mature Secondary Structure 
ATAIQKITLSSAHDIPFNKLVLSQSNVRRVKAGVSIEELAQSIARRGLIQSLHVRPVLD
CCHHHHHHHCCCCCCCHHHEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEC
ADGAETGIFEVPAGGRRYRALELLVKQKRLAKTAPVPCVVGDANSGILVDEVSLVENIER
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHHHHH
APLHPLDQFRAFQAMREKGMTEEAIAAAFFVGVNIVKQRLRLASVSPVLLEIYADDGMTL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
EQLMAFTVSSDHARQEQVWDAIKDGWQKEPYHIRRMLTETTVRASDRRAVFVGVEAYEAA
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
GGIVLRDLFQSDDGGWLQDPALLDRLVAEKLKTAADEIAGEGWKWVEAALSFPYGHEHGL
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHH
RELAGTAVDLTDEERATREALRDEYDRLEAEYAEADELPDEIDARLGEIEQALDAFEQRP
HHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
AIYDPADIPTAGVFVSLDADGSLSVDRGYVRPEDERPVAPEGDDTTETDGDTGHSATPAV
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QRAVVTVGGQAAEPEDDEEDGIKPLPERLVIELTAHRTLALRNALAEHPDVAMTMLLHKL
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VSDTFRRPAPTGCLEASVRHVFFSAQPEELKDSGTAHEIAERHGRWGDHVPADDQALWDW
HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHH
LTDLDPGTRLDLLAHCVSFGVNALFERPNPYGSGVSQHGLDVRLAQADRLARATGLDMVA
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCHHHH
AGWRPTVGNYLGRVTKPRILEAVREGAGERAAQLIDHLKKGDMAKEAERLLADTAWLPEP
CCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
LRLIDPHDGEVIEPGAEADADEEAALPAFLSEDGDEDAEEIEDEDALTIAAE
HHHCCCCCCCEECCCCCCCCCCHHCCCHHHCCCCCCHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]