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The map label for this gene is glcI [H]

Identifier: 154246891

GI number: 154246891

Start: 3281538

End: 3282773

Strand: Reverse

Name: glcI [H]

Synonym: Xaut_2956

Alternate gene names: 154246891

Gene position: 3282773-3281538 (Counterclockwise)

Preceding gene: 154246894

Following gene: 154246890

Centisome position: 61.83

GC content: 61.0

Gene sequence:

>1236_bases
ATGCGCACGTGGGTCTTCTGTTCCGCCGCGGCAGCGGCGCTCGCCTGCGCCGGCATTCCGCAAGCAGCGGATGCGCAGAC
ACTACCGGTCACGATCATCAACAAGACCGGCATCAAGGGTAAGATGTACATAACGGTCCTGGGACGGAGTCCTCAAAATC
CAGCGATTCACATCTACAGCGACGCGAACGGCAATACTAGGCAATTTACCGTCAATCCGACGCCGACGGACTATGGATTT
TCAACCACGGCACTGAGCTATACCTTCAAGATTCCCCAGATCAATTCGGGGCGAATCTACGTCTCCTTCTGCGCGCCGGC
CTGGACCACCGCCAGCCAGACCGGCGACACGCCGCCCCAGATCGCCCCCAACACGCCGGCCACCTGGGTGCCCACAAACA
AGAACTTCAATACCGTCCTGGACTTCGCCGAGTTCGACTGGGTTCCCTCGGGCAGCACCACCTCGATGGATATCGACACC
ACCCAGGTGGACGCCCTGAGCATCCCGATGACCCTCTCCCTCAGCGGGACACCCGGAGGCCGGGCCACGACGTTCACCTC
CGGCTTCAAGGACCAGACCACCAGCACCAAGGTCGTGCCGGCGCTGGCCTCTGCGCCGTGGAACAAGCTCGTCGTCTACG
ACACCAGGAAGCGCCCGATCCGCATCCTGGTGCCGGAAAAGGCGATGGCGCTTCCCTCGTCGCATCCCAATTATTTTCCG
AACAACTACCTGAGCAGCTACATCGGCCAGGTGTTCTCCAAATTCGCGACGCCGGGACAAACGTTCACCATCACCGGCGA
CGATGGCACGCTCTATTCCGGCAAGATCCAGAACAACCAGATCGTCCTGAAGCCGAACAACGGCAACCCTGCCAACGTCT
TCGGCAAGCCGAGCACCGTGTATGTCTGGCAGAACGGCGCGCCGCCCGTGAGCGGCCCCGCGGCAACGGCGCCCCAGCTG
CAGAAATACATCCAGGCCGCCTTCCTGCGTTCGACCTTCCTGAATACCACTACGAACTCGCTCTCCACCTGCCAGGGCGT
GGTTCCCTATTCGTTGCCGCCGCAGAATTTGTACTCCAGCACCATCCACGCGCTCTCCATCAATCAGGGCGCCTATACCT
TCCCCTATGACGACGTTTGCGCGCGCAGCAGCAACATCTCGCTGACCAGTCCCACGTCGGTGACCTTGACGCTGCTTCCG
CTGAGCACCAGCATGAGTTCCATGACCTGCAACTGA

Upstream 100 bases:

>100_bases
ACCCCTGCGCACGGACCGGAACCGGTCTGTCGTTCGTCCTGCGGAACCTCAAACGCCAAAGCTAGCACCGCTATTTCAAC
TGCCGATCAAGGGGGAGCAT

Downstream 100 bases:

>100_bases
CGATGCGAACCCCGCCGCGGGCTCGATCGCAGCCCACGGACCGGTTTCACCCCAGATCATGGCCGTGCGCATCGCCTTGT
ACTGTCCCGACATTGCCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: (1->3)-beta-glucan endohydrolase; (1->3)-beta-glucanase [H]

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MRTWVFCSAAAAALACAGIPQAADAQTLPVTIINKTGIKGKMYITVLGRSPQNPAIHIYSDANGNTRQFTVNPTPTDYGF
STTALSYTFKIPQINSGRIYVSFCAPAWTTASQTGDTPPQIAPNTPATWVPTNKNFNTVLDFAEFDWVPSGSTTSMDIDT
TQVDALSIPMTLSLSGTPGGRATTFTSGFKDQTTSTKVVPALASAPWNKLVVYDTRKRPIRILVPEKAMALPSSHPNYFP
NNYLSSYIGQVFSKFATPGQTFTITGDDGTLYSGKIQNNQIVLKPNNGNPANVFGKPSTVYVWQNGAPPVSGPAATAPQL
QKYIQAAFLRSTFLNTTTNSLSTCQGVVPYSLPPQNLYSSTIHALSINQGAYTFPYDDVCARSSNISLTSPTSVTLTLLP
LSTSMSSMTCN

Sequences:

>Translated_411_residues
MRTWVFCSAAAAALACAGIPQAADAQTLPVTIINKTGIKGKMYITVLGRSPQNPAIHIYSDANGNTRQFTVNPTPTDYGF
STTALSYTFKIPQINSGRIYVSFCAPAWTTASQTGDTPPQIAPNTPATWVPTNKNFNTVLDFAEFDWVPSGSTTSMDIDT
TQVDALSIPMTLSLSGTPGGRATTFTSGFKDQTTSTKVVPALASAPWNKLVVYDTRKRPIRILVPEKAMALPSSHPNYFP
NNYLSSYIGQVFSKFATPGQTFTITGDDGTLYSGKIQNNQIVLKPNNGNPANVFGKPSTVYVWQNGAPPVSGPAATAPQL
QKYIQAAFLRSTFLNTTTNSLSTCQGVVPYSLPPQNLYSSTIHALSINQGAYTFPYDDVCARSSNISLTSPTSVTLTLLP
LSTSMSSMTCN
>Mature_411_residues
MRTWVFCSAAAAALACAGIPQAADAQTLPVTIINKTGIKGKMYITVLGRSPQNPAIHIYSDANGNTRQFTVNPTPTDYGF
STTALSYTFKIPQINSGRIYVSFCAPAWTTASQTGDTPPQIAPNTPATWVPTNKNFNTVLDFAEFDWVPSGSTTSMDIDT
TQVDALSIPMTLSLSGTPGGRATTFTSGFKDQTTSTKVVPALASAPWNKLVVYDTRKRPIRILVPEKAMALPSSHPNYFP
NNYLSSYIGQVFSKFATPGQTFTITGDDGTLYSGKIQNNQIVLKPNNGNPANVFGKPSTVYVWQNGAPPVSGPAATAPQL
QKYIQAAFLRSTFLNTTTNSLSTCQGVVPYSLPPQNLYSSTIHALSINQGAYTFPYDDVCARSSNISLTSPTSVTLTLLP
LSTSMSSMTCN

Specific function: Lysis of cellular walls containing beta-1,3-glucans. Implicated in the defense against fungal pathogens [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ricin B-type lectin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008997
- InterPro:   IPR000772
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00652 Ricin_B_lectin [H]

EC number: =3.2.1.39 [H]

Molecular weight: Translated: 44015; Mature: 44015

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTWVFCSAAAAALACAGIPQAADAQTLPVTIINKTGIKGKMYITVLGRSPQNPAIHIYS
CCEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEEE
DANGNTRQFTVNPTPTDYGFSTTALSYTFKIPQINSGRIYVSFCAPAWTTASQTGDTPPQ
CCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCC
IAPNTPATWVPTNKNFNTVLDFAEFDWVPSGSTTSMDIDTTQVDALSIPMTLSLSGTPGG
CCCCCCCEEEECCCCHHHEEEHHHHCCCCCCCCEEEECCCCEEEEEECCEEEEECCCCCC
RATTFTSGFKDQTTSTKVVPALASAPWNKLVVYDTRKRPIRILVPEKAMALPSSHPNYFP
CEEEEECCCCCCCCCCEEEHHHHCCCCCEEEEEECCCCCEEEEECCHHHCCCCCCCCCCC
NNYLSSYIGQVFSKFATPGQTFTITGDDGTLYSGKIQNNQIVLKPNNGNPANVFGKPSTV
HHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECEECCCEEEEECCCCCCCEECCCCCEE
YVWQNGAPPVSGPAATAPQLQKYIQAAFLRSTFLNTTTNSLSTCQGVVPYSLPPQNLYSS
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHC
TIHALSINQGAYTFPYDDVCARSSNISLTSPTSVTLTLLPLSTSMSSMTCN
EEEEEEECCCCEECCCHHHHCCCCCCEEECCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MRTWVFCSAAAAALACAGIPQAADAQTLPVTIINKTGIKGKMYITVLGRSPQNPAIHIYS
CCEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEEE
DANGNTRQFTVNPTPTDYGFSTTALSYTFKIPQINSGRIYVSFCAPAWTTASQTGDTPPQ
CCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCC
IAPNTPATWVPTNKNFNTVLDFAEFDWVPSGSTTSMDIDTTQVDALSIPMTLSLSGTPGG
CCCCCCCEEEECCCCHHHEEEHHHHCCCCCCCCEEEECCCCEEEEEECCEEEEECCCCCC
RATTFTSGFKDQTTSTKVVPALASAPWNKLVVYDTRKRPIRILVPEKAMALPSSHPNYFP
CEEEEECCCCCCCCCCEEEHHHHCCCCCEEEEEECCCCCEEEEECCHHHCCCCCCCCCCC
NNYLSSYIGQVFSKFATPGQTFTITGDDGTLYSGKIQNNQIVLKPNNGNPANVFGKPSTV
HHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECEECCCEEEEECCCCCCCEECCCCCEE
YVWQNGAPPVSGPAATAPQLQKYIQAAFLRSTFLNTTTNSLSTCQGVVPYSLPPQNLYSS
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHC
TIHALSINQGAYTFPYDDVCARSSNISLTSPTSVTLTLLPLSTSMSSMTCN
EEEEEEECCCCEECCCHHHHCCCCCCEEECCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA