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The map label for this gene is ygbK [C]

Identifier: 154246858

GI number: 154246858

Start: 3246124

End: 3247548

Strand: Reverse

Name: ygbK [C]

Synonym: Xaut_2923

Alternate gene names: 154246858

Gene position: 3247548-3246124 (Counterclockwise)

Preceding gene: 154246859

Following gene: 154246857

Centisome position: 61.17

GC content: 73.4

Gene sequence:

>1425_bases
ATGACGGCGGGCGCCTCTTCTGCCGCCTCATGGCCCGCCGGCCTGCTGCTGGCCTATTACGGCGACGACTTCACCGGCTC
CACCGATGCGCTGGAAGCCATCACGGCGGCGGGCGTGCCGTCCGTGCTGTTCCTGCGCCTGCCCACGGACGAGATGCTCG
CCCGCTTTCCCGGCGTCCGCTGCGTCGGCCTCGCCGGCTCGTCGCGCGGGCGCGCGCCCGCGTGGATGGACGCCGAGCTG
CCCGCCGTGTTCGCCCGGCTCAAGTCCTTGGGCGCGCCGATCCTGCACTACAAGGTCTGCTCCACCTTCGATTCCGCCCC
CCACGTGGGCTCCATCGGCCGTGCCGTGGATCTGGGGGTGGGGGCCATGGGCGGGCGCTGGAGCCCCATGGTGGTGGGCG
TGCCGCGCCTCGGCCGGTTCCAGGTGTTCGGCACCCTGTTCGTCACCGTGAACGGCACCACCTACCGGCTCGACCGCCAC
CCCACAATGTCGCGCCATCCGGTGACGCCCATGGACGAGGCGGACCTTGGCCGCCACCTCGCCCGCCAGACCGCACGGCG
CATCGACCTCATCGACATGGCCCAGATCCGCGCCGACGCCGCCGACACCCGCCGCGCCATGCTGGAGGGCGACGACACCC
CGGTTGTGCTCATCGACGTGATGGACGAGGACACGCTGACCGAGGCCGGCCGCCTCATCTGGGAGAACCGGGGCGAGGGC
CTGTTCAGCGCCTCCTCTTCCGGCCTGCAATATGCGCTGGCCGCCCACTGGCGGCGGCTCGGCCTGCTGCCGGCGCAGCC
CGGCCTGCCGGCGGCGGCGGGCGTGCCGCAGATCGCGGTGGTGAGCGGCAGTTGCTCCCCGGTCACCGCCGCCCAGATCG
GCTGGGCGCGGGCCCACGGCTTCCACACCGAGCGGCTGGACCTGTCCCGCGCCCTCGACCCGACGCTGCGCGAGGCCGAG
ATCGCCCGCACGCTGGAGGTCGCCCGTGCGGCGCTCGGGCGCGGCGAGAGCCCGGTGATCTACAGCGCCGAAGGCCCGGA
CGATCCCCACGTCCTCGCCTTCGACCATACGGCAAGCACCCTCGGCCTCACTCGCGCGGAGGCGGCGCGGACGGTCGGCA
CAGTGCTGGCCGAGATCATGCGGCGCATGGTGGAGGCCCGGCTGGTCCGCCGCATCATGGTGGCGGGAGGCGACAGCTCC
GGCGAGGTGATGGAGGCGCTCAACGCCTTCGCCCTCGATATCGCCTCAGGCCTTGCCCCCGGCGCGCCCCTGTGCCGGGC
GTGGTCGGACGATCCCCTCTATGACGGGCTGGAGGTGGTGCTGAAGGGCGGCCAGATGGGGCCCACCGACTTCTTCACCA
CAGTCCGCGACGGGCTTGCGGCGGCGGCGCCAGTCCGCGCGACGGGCCGGAGCGCCGTGGCGTAG

Upstream 100 bases:

>100_bases
AAGCCCTAAGGGCCGCCTGGCGCGCCGCCATGGCCGGCGCCAGCCTCGAGGACGAGGCAACCCGCAGCCCTGCCCTGCGC
AGCGCCCTCGGGTTCTGGCG

Downstream 100 bases:

>100_bases
CCGGACGGCGGCCGGGTCCCCTCATTTGCCGTCGTGGTTCCATGGCTGCGGAAGGCGGCAATCCCTTCTGCCGATCGCGA
GGACGGTCGGGCGCTCTCAC

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MTAGASSAASWPAGLLLAYYGDDFTGSTDALEAITAAGVPSVLFLRLPTDEMLARFPGVRCVGLAGSSRGRAPAWMDAEL
PAVFARLKSLGAPILHYKVCSTFDSAPHVGSIGRAVDLGVGAMGGRWSPMVVGVPRLGRFQVFGTLFVTVNGTTYRLDRH
PTMSRHPVTPMDEADLGRHLARQTARRIDLIDMAQIRADAADTRRAMLEGDDTPVVLIDVMDEDTLTEAGRLIWENRGEG
LFSASSSGLQYALAAHWRRLGLLPAQPGLPAAAGVPQIAVVSGSCSPVTAAQIGWARAHGFHTERLDLSRALDPTLREAE
IARTLEVARAALGRGESPVIYSAEGPDDPHVLAFDHTASTLGLTRAEAARTVGTVLAEIMRRMVEARLVRRIMVAGGDSS
GEVMEALNAFALDIASGLAPGAPLCRAWSDDPLYDGLEVVLKGGQMGPTDFFTTVRDGLAAAAPVRATGRSAVA

Sequences:

>Translated_474_residues
MTAGASSAASWPAGLLLAYYGDDFTGSTDALEAITAAGVPSVLFLRLPTDEMLARFPGVRCVGLAGSSRGRAPAWMDAEL
PAVFARLKSLGAPILHYKVCSTFDSAPHVGSIGRAVDLGVGAMGGRWSPMVVGVPRLGRFQVFGTLFVTVNGTTYRLDRH
PTMSRHPVTPMDEADLGRHLARQTARRIDLIDMAQIRADAADTRRAMLEGDDTPVVLIDVMDEDTLTEAGRLIWENRGEG
LFSASSSGLQYALAAHWRRLGLLPAQPGLPAAAGVPQIAVVSGSCSPVTAAQIGWARAHGFHTERLDLSRALDPTLREAE
IARTLEVARAALGRGESPVIYSAEGPDDPHVLAFDHTASTLGLTRAEAARTVGTVLAEIMRRMVEARLVRRIMVAGGDSS
GEVMEALNAFALDIASGLAPGAPLCRAWSDDPLYDGLEVVLKGGQMGPTDFFTTVRDGLAAAAPVRATGRSAVA
>Mature_473_residues
TAGASSAASWPAGLLLAYYGDDFTGSTDALEAITAAGVPSVLFLRLPTDEMLARFPGVRCVGLAGSSRGRAPAWMDAELP
AVFARLKSLGAPILHYKVCSTFDSAPHVGSIGRAVDLGVGAMGGRWSPMVVGVPRLGRFQVFGTLFVTVNGTTYRLDRHP
TMSRHPVTPMDEADLGRHLARQTARRIDLIDMAQIRADAADTRRAMLEGDDTPVVLIDVMDEDTLTEAGRLIWENRGEGL
FSASSSGLQYALAAHWRRLGLLPAQPGLPAAAGVPQIAVVSGSCSPVTAAQIGWARAHGFHTERLDLSRALDPTLREAEI
ARTLEVARAALGRGESPVIYSAEGPDDPHVLAFDHTASTLGLTRAEAARTVGTVLAEIMRRMVEARLVRRIMVAGGDSSG
EVMEALNAFALDIASGLAPGAPLCRAWSDDPLYDGLEVVLKGGQMGPTDFFTTVRDGLAAAAPVRATGRSAVA

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=417, Percent_Identity=27.5779376498801, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 50025; Mature: 49893

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGASSAASWPAGLLLAYYGDDFTGSTDALEAITAAGVPSVLFLRLPTDEMLARFPGVR
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCE
CVGLAGSSRGRAPAWMDAELPAVFARLKSLGAPILHYKVCSTFDSAPHVGSIGRAVDLGV
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCC
GAMGGRWSPMVVGVPRLGRFQVFGTLFVTVNGTTYRLDRHPTMSRHPVTPMDEADLGRHL
CCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCHHHHHHHH
ARQTARRIDLIDMAQIRADAADTRRAMLEGDDTPVVLIDVMDEDTLTEAGRLIWENRGEG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHEECCCCC
LFSASSSGLQYALAAHWRRLGLLPAQPGLPAAAGVPQIAVVSGSCSPVTAAQIGWARAHG
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCHHHHCC
FHTERLDLSRALDPTLREAEIARTLEVARAALGRGESPVIYSAEGPDDPHVLAFDHTAST
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCHH
LGLTRAEAARTVGTVLAEIMRRMVEARLVRRIMVAGGDSSGEVMEALNAFALDIASGLAP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
GAPLCRAWSDDPLYDGLEVVLKGGQMGPTDFFTTVRDGLAAAAPVRATGRSAVA
CCCHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TAGASSAASWPAGLLLAYYGDDFTGSTDALEAITAAGVPSVLFLRLPTDEMLARFPGVR
CCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCE
CVGLAGSSRGRAPAWMDAELPAVFARLKSLGAPILHYKVCSTFDSAPHVGSIGRAVDLGV
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCC
GAMGGRWSPMVVGVPRLGRFQVFGTLFVTVNGTTYRLDRHPTMSRHPVTPMDEADLGRHL
CCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCHHHHHHHH
ARQTARRIDLIDMAQIRADAADTRRAMLEGDDTPVVLIDVMDEDTLTEAGRLIWENRGEG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHEECCCCC
LFSASSSGLQYALAAHWRRLGLLPAQPGLPAAAGVPQIAVVSGSCSPVTAAQIGWARAHG
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCHHHHCC
FHTERLDLSRALDPTLREAEIARTLEVARAALGRGESPVIYSAEGPDDPHVLAFDHTAST
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCHH
LGLTRAEAARTVGTVLAEIMRRMVEARLVRRIMVAGGDSSGEVMEALNAFALDIASGLAP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
GAPLCRAWSDDPLYDGLEVVLKGGQMGPTDFFTTVRDGLAAAAPVRATGRSAVA
CCCHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]