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The map label for this gene is insF1 [H]

Identifier: 154246841

GI number: 154246841

Start: 3228347

End: 3229207

Strand: Reverse

Name: insF1 [H]

Synonym: Xaut_2905

Alternate gene names: 154246841

Gene position: 3229207-3228347 (Counterclockwise)

Preceding gene: 154246842

Following gene: 154246836

Centisome position: 60.83

GC content: 64.0

Gene sequence:

>861_bases
ATGAGGTTCGCCTTCATCGCGAAGCACCGGAACATCTGGCCGGTGGCATGGCTATGCGACGCTCTGGACATCTCCCGGTC
GGGCTTGCGTGCTTGGCTCAACCGCAGCCCCAGTGCGCATGCCCGACACGATGACGTGCTCGCGACGGCGATCGATCGGA
GCTTCAAGAGCAGCGATCGAACCTATGGCGCGCGACGCGTCTGGCACGATGTGCTGGCGGAAGGGTTCTCCTGCGGGCTG
CACCGGGTCGAACGGATCATGCGTGAGCATGGGTTGCGGGCCCGGCCGCGCCGTCGTGGGCTGCCGAAGGATGTCGGCGT
GCGGGCGGCCGCTTCGGACAATCTTCTCGACCGCGCCTTCGAGGCGTCGGCTCCAAACCAGAAATGGGTGGCGGACTTCA
CCTACATCTGGACCGCGGAGGGTTGGCTCTACGTTACCGCGGTCGTCGACCTGTTCTCACGACGTGTCGTCGGCTGGGCG
ATGAAGGCGGAGATGACGGCACAGCTCGTCGCCGATGCCCTCATCATGGCGGTCTGGCGCCGCGGCAAGACGGACAGCCT
GCTGCACCACAGCGACCAGGGCAGCCAATATACGAGCGAGCGGTTCCAGGGCCTGATGGCCGACCATGGCATCACCTGCT
CGATGAGCCGGTCGGGCAACGTCTGGGACAATGCGGCGATGGAGAGCTTCTTCTCGTCGCAGAAAACCGAGCGCACAGCC
CGCAAGGTCTACAGGATGAGGGATGACGCGAGAGCGGATGTGTTCGACTACATCGAGCGCTTCTACAATCGCCGACGCCG
GCACTCGACACTGGGCTACCTGAGCCCCGTCGAGTTCGAGCAGCGAGCTAAATTAGCTTAA

Upstream 100 bases:

>100_bases
AGCAGCTCGAGATTGACCGGCTGCGCAGGGAAGTGACCAAGCTGAAGGCGGAGCGCGACATCCTAAAAAGGGCCGCGGCC
TTCTTCGCGAGGGAAGCGAC

Downstream 100 bases:

>100_bases
CCGCGTGTCCACAGAACCGGCAGCAGGCCAATGAGCCCTGAGCCCAGCGCATCATCCCTGGCGGCTTGGAAAGCGCTTCG
CGGAGGGTCGTGGCCAATGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRFAFIAKHRNIWPVAWLCDALDISRSGLRAWLNRSPSAHARHDDVLATAIDRSFKSSDRTYGARRVWHDVLAEGFSCGL
HRVERIMREHGLRARPRRRGLPKDVGVRAAASDNLLDRAFEASAPNQKWVADFTYIWTAEGWLYVTAVVDLFSRRVVGWA
MKAEMTAQLVADALIMAVWRRGKTDSLLHHSDQGSQYTSERFQGLMADHGITCSMSRSGNVWDNAAMESFFSSQKTERTA
RKVYRMRDDARADVFDYIERFYNRRRRHSTLGYLSPVEFEQRAKLA

Sequences:

>Translated_286_residues
MRFAFIAKHRNIWPVAWLCDALDISRSGLRAWLNRSPSAHARHDDVLATAIDRSFKSSDRTYGARRVWHDVLAEGFSCGL
HRVERIMREHGLRARPRRRGLPKDVGVRAAASDNLLDRAFEASAPNQKWVADFTYIWTAEGWLYVTAVVDLFSRRVVGWA
MKAEMTAQLVADALIMAVWRRGKTDSLLHHSDQGSQYTSERFQGLMADHGITCSMSRSGNVWDNAAMESFFSSQKTERTA
RKVYRMRDDARADVFDYIERFYNRRRRHSTLGYLSPVEFEQRAKLA
>Mature_286_residues
MRFAFIAKHRNIWPVAWLCDALDISRSGLRAWLNRSPSAHARHDDVLATAIDRSFKSSDRTYGARRVWHDVLAEGFSCGL
HRVERIMREHGLRARPRRRGLPKDVGVRAAASDNLLDRAFEASAPNQKWVADFTYIWTAEGWLYVTAVVDLFSRRVVGWA
MKAEMTAQLVADALIMAVWRRGKTDSLLHHSDQGSQYTSERFQGLMADHGITCSMSRSGNVWDNAAMESFFSSQKTERTA
RKVYRMRDDARADVFDYIERFYNRRRRHSTLGYLSPVEFEQRAKLA

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=242, Percent_Identity=34.7107438016529, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1788405, Length=290, Percent_Identity=41.7241379310345, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1787263, Length=290, Percent_Identity=41.7241379310345, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1786753, Length=290, Percent_Identity=41.7241379310345, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1786570, Length=290, Percent_Identity=41.7241379310345, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1786490, Length=290, Percent_Identity=41.7241379310345, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1789981, Length=270, Percent_Identity=31.4814814814815, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32976; Mature: 32976

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFAFIAKHRNIWPVAWLCDALDISRSGLRAWLNRSPSAHARHDDVLATAIDRSFKSSDR
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCH
TYGARRVWHDVLAEGFSCGLHRVERIMREHGLRARPRRRGLPKDVGVRAAASDNLLDRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHCCCCCCCCHHHHHHH
EASAPNQKWVADFTYIWTAEGWLYVTAVVDLFSRRVVGWAMKAEMTAQLVADALIMAVWR
HCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGKTDSLLHHSDQGSQYTSERFQGLMADHGITCSMSRSGNVWDNAAMESFFSSQKTERTA
CCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
RKVYRMRDDARADVFDYIERFYNRRRRHSTLGYLSPVEFEQRAKLA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MRFAFIAKHRNIWPVAWLCDALDISRSGLRAWLNRSPSAHARHDDVLATAIDRSFKSSDR
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCH
TYGARRVWHDVLAEGFSCGLHRVERIMREHGLRARPRRRGLPKDVGVRAAASDNLLDRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHCCCCCCCCHHHHHHH
EASAPNQKWVADFTYIWTAEGWLYVTAVVDLFSRRVVGWAMKAEMTAQLVADALIMAVWR
HCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGKTDSLLHHSDQGSQYTSERFQGLMADHGITCSMSRSGNVWDNAAMESFFSSQKTERTA
CCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
RKVYRMRDDARADVFDYIERFYNRRRRHSTLGYLSPVEFEQRAKLA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]