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The map label for this gene is trbI [H]

Identifier: 154246825

GI number: 154246825

Start: 3212089

End: 3213294

Strand: Direct

Name: trbI [H]

Synonym: Xaut_2887

Alternate gene names: 154246825

Gene position: 3212089-3213294 (Clockwise)

Preceding gene: 154246824

Following gene: 154246832

Centisome position: 60.5

GC content: 67.74

Gene sequence:

>1206_bases
GTGAGTGAGCCTGGCCCCCGGAAAGAAGAACAGGAGGCGCCGCTGACCGGGCCGGCCGACGACGCTGCCGCCCCAATGCG
GCTTCGTGCGGAAGCGCCGCGCGTCACGCGCCTCTCGCGCAAGGTGCTTGCCGGCATCGGCCTTCTGGCGAGCGTCGGGA
TCGGCGGCGCGTTGATCTATGCGCTCCAAACCCGCGAGGGGGGGACGCCCGCCGAGGAACTCCACTCGACCGACAATCGC
TCGACTGCCGACGGCCTTTCCGGATTGCCGCGCGATTATAGCGGCGTTCCGCAGCTTGGCCCGCCGCTCCCGGGCGACCT
CGGGCGCCCCATCCTGGGCGCGCAGAATCGTGGTCAGCCGTTGCCAGCCCAAGCCAATCCTGGTCTTAGCGCCGAGGAGC
AGCGCCGTTTGCAGGAGATCGAGACTGCGCGCGTCAGCAGGCTTTTCACCGGGACGGAGAACCGTCCAATGGCGTCGACG
GGCCCCGCGGCTGCGACGATCGCGCCACCGCCGGCGCCTGACCTCGCCGGCCTCGGCCTCGCGCCACCACCTGCCACACC
ATCAGCGCAAGATCGACAGCTTGCATTCCTCAATGCGGCCGCCGATCGGCGCACGGTGGCACAGGATCGCGTTGCGGCGC
CGGCGTCCCCCTATATCCTTCAGGCGGGCGCCGTGATCGCCGCCGCGCTCATCACGGGCATCCGCTCCGATCTTCCGGGC
CAGATCACCGCGCAGGTGACGGAGAACATCTACGACAGCCCGACAGGGCGCATCCTGCTGGTGCCGCAAGGGACGCGGAT
CATCGGCCAGTACGACAACAATGTTCAGTTCGGCCAGAGCCGTGTGCTCCTGGTCTGGAATCGGCTGATCCTCCCGAACG
GGCGCTCGATCGTCCTCGAGCGTCAGCCCGGCGCCGACGCTGAAGGCTATGCGGGCCTTCAGGATGGCATCGACTATCAT
TGGTGGGAACTGGCAAAGGCGGCGGGACTATCCACGCTGCTGAGCATTGGCGCCGAGCTCGCCACCAACGACGACGACCG
CCTGATTCAGGCGATCCGCAACGGCGGGCAAGACACCATCAACGATGCGGGCCAACAGATCGTCCGCCGCCAGCTCAACG
TCGCGCCGACGTTGACCATACGGCCGGGCTTTCCCGTTCGCGTTATCGTCACGCGTGACCTGGTCCTCGAACCCCACGGA
GGCTAA

Upstream 100 bases:

>100_bases
TGATCGTCGACCGCCTGTTCGCGGCCGCCGAGCTGCGCTTCGGCGCAGGCGACCGCCAGAAACGCGTCCGGATCGTCCGC
ACCGATGGGAGGCCCGCGTC

Downstream 100 bases:

>100_bases
CCGATGGCCAAGCTAAGGCTAGGGCCGCTCGAAGACGACAAGCCGGTGAAACTCTCGGTGGAATTGCCCGCTGCTCTTCA
CCGCGATCTCATCGCATATG

Product: conjugation TrbI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSEPGPRKEEQEAPLTGPADDAAAPMRLRAEAPRVTRLSRKVLAGIGLLASVGIGGALIYALQTREGGTPAEELHSTDNR
STADGLSGLPRDYSGVPQLGPPLPGDLGRPILGAQNRGQPLPAQANPGLSAEEQRRLQEIETARVSRLFTGTENRPMAST
GPAAATIAPPPAPDLAGLGLAPPPATPSAQDRQLAFLNAAADRRTVAQDRVAAPASPYILQAGAVIAAALITGIRSDLPG
QITAQVTENIYDSPTGRILLVPQGTRIIGQYDNNVQFGQSRVLLVWNRLILPNGRSIVLERQPGADAEGYAGLQDGIDYH
WWELAKAAGLSTLLSIGAELATNDDDRLIQAIRNGGQDTINDAGQQIVRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPHG
G

Sequences:

>Translated_401_residues
MSEPGPRKEEQEAPLTGPADDAAAPMRLRAEAPRVTRLSRKVLAGIGLLASVGIGGALIYALQTREGGTPAEELHSTDNR
STADGLSGLPRDYSGVPQLGPPLPGDLGRPILGAQNRGQPLPAQANPGLSAEEQRRLQEIETARVSRLFTGTENRPMAST
GPAAATIAPPPAPDLAGLGLAPPPATPSAQDRQLAFLNAAADRRTVAQDRVAAPASPYILQAGAVIAAALITGIRSDLPG
QITAQVTENIYDSPTGRILLVPQGTRIIGQYDNNVQFGQSRVLLVWNRLILPNGRSIVLERQPGADAEGYAGLQDGIDYH
WWELAKAAGLSTLLSIGAELATNDDDRLIQAIRNGGQDTINDAGQQIVRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPHG
G
>Mature_400_residues
SEPGPRKEEQEAPLTGPADDAAAPMRLRAEAPRVTRLSRKVLAGIGLLASVGIGGALIYALQTREGGTPAEELHSTDNRS
TADGLSGLPRDYSGVPQLGPPLPGDLGRPILGAQNRGQPLPAQANPGLSAEEQRRLQEIETARVSRLFTGTENRPMASTG
PAAATIAPPPAPDLAGLGLAPPPATPSAQDRQLAFLNAAADRRTVAQDRVAAPASPYILQAGAVIAAALITGIRSDLPGQ
ITAQVTENIYDSPTGRILLVPQGTRIIGQYDNNVQFGQSRVLLVWNRLILPNGRSIVLERQPGADAEGYAGLQDGIDYHW
WELAKAAGLSTLLSIGAELATNDDDRLIQAIRNGGQDTINDAGQQIVRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPHGG

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 42248; Mature: 42117

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPGPRKEEQEAPLTGPADDAAAPMRLRAEAPRVTRLSRKVLAGIGLLASVGIGGALIY
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
ALQTREGGTPAEELHSTDNRSTADGLSGLPRDYSGVPQLGPPLPGDLGRPILGAQNRGQP
EEECCCCCCCHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPAQANPGLSAEEQRRLQEIETARVSRLFTGTENRPMASTGPAAATIAPPPAPDLAGLGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
APPPATPSAQDRQLAFLNAAADRRTVAQDRVAAPASPYILQAGAVIAAALITGIRSDLPG
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCC
QITAQVTENIYDSPTGRILLVPQGTRIIGQYDNNVQFGQSRVLLVWNRLILPNGRSIVLE
CCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEE
RQPGADAEGYAGLQDGIDYHWWELAKAAGLSTLLSIGAELATNDDDRLIQAIRNGGQDTI
CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCCCHHH
NDAGQQIVRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPHGG
HHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCCCC
>Mature Secondary Structure 
SEPGPRKEEQEAPLTGPADDAAAPMRLRAEAPRVTRLSRKVLAGIGLLASVGIGGALIY
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
ALQTREGGTPAEELHSTDNRSTADGLSGLPRDYSGVPQLGPPLPGDLGRPILGAQNRGQP
EEECCCCCCCHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPAQANPGLSAEEQRRLQEIETARVSRLFTGTENRPMASTGPAAATIAPPPAPDLAGLGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
APPPATPSAQDRQLAFLNAAADRRTVAQDRVAAPASPYILQAGAVIAAALITGIRSDLPG
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCC
QITAQVTENIYDSPTGRILLVPQGTRIIGQYDNNVQFGQSRVLLVWNRLILPNGRSIVLE
CCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEE
RQPGADAEGYAGLQDGIDYHWWELAKAAGLSTLLSIGAELATNDDDRLIQAIRNGGQDTI
CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCCCHHH
NDAGQQIVRRQLNVAPTLTIRPGFPVRVIVTRDLVLEPHGG
HHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]