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The map label for this gene is trbF [H]

Identifier: 154246823

GI number: 154246823

Start: 3210387

End: 3211070

Strand: Direct

Name: trbF [H]

Synonym: Xaut_2885

Alternate gene names: 154246823

Gene position: 3210387-3211070 (Clockwise)

Preceding gene: 154246822

Following gene: 154246824

Centisome position: 60.47

GC content: 65.94

Gene sequence:

>684_bases
ATGTTCAGAAGACCCTCCGTTCACTACGGCAAGACGCCCGAACCTGAGACGCCCTACCAGCGCGCCGCTCAGGTCTGGGA
TGAGCGCATCGGCGCCGCGCGCGTTCAGGCCAAGAACTGGCGCTTCATGGCGTTCGGCTCGCTGATCCTGTCCGCTGGTT
TCGCGGCGGCGCTTGTCTGGCAATCGGCGCGCGGAACGATCGTCCCTTGGGTCGTTCAGGTCGACAGGCTCGGCCAGGCG
CAGGCAGTCGCGCCCGCTGTCGCCGACTATCGTCCGACTGACCCGCAGATCGCCTTCCATCTCGCGCGCTTCATCGAGCA
GGTTCGATCGATTCCGTCCGACGCTATCATCGTCCGGCAGAATTGGCTGCGCGCCTACGATTTCACGACCGACCGCGGTG
CGATGGCACTGAACGACTACGCGCGCTCGAACGACCCCTTCACCAAGGTCGGCCGGCAGCAGATCGCTGTCGATGTCTCC
AGCGTCATCCGGGCGTCGCCCGACAGCTTCCGCGTCGCCTGGGTCGAGCGCCGCTACGAGAACGGCCAGCTCGCCGAGAC
GACCCGCTGGACCGCCATCCTCACCATCGTCATGCAGGTGCCCCGCAATGCCGACCGGCTGCGCGCCAACCCGCTCGGCA
TCTACGTCAACGCCATCAACTGGTCACGGGAGCTTGGGCAATGA

Upstream 100 bases:

>100_bases
AAGCCCTGAGCCACGGTGTGACCGCGGCCGCCCATGCCGTGCGCAGCGGCGACAGCCATGGCGGCGGCTCTTCCATCAAT
CTCTCCGAAGGCGATCGCTG

Downstream 100 bases:

>100_bases
AGCCGTCTTTCCGTAAAGCCGGAAACCCGGCTTCTCGCACTTCCACATTTGCGATTCTGCTGCTGTGCACGTCGGCCCTC
GCCGGCTGCGCCACGGCGAA

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MFRRPSVHYGKTPEPETPYQRAAQVWDERIGAARVQAKNWRFMAFGSLILSAGFAAALVWQSARGTIVPWVVQVDRLGQA
QAVAPAVADYRPTDPQIAFHLARFIEQVRSIPSDAIIVRQNWLRAYDFTTDRGAMALNDYARSNDPFTKVGRQQIAVDVS
SVIRASPDSFRVAWVERRYENGQLAETTRWTAILTIVMQVPRNADRLRANPLGIYVNAINWSRELGQ

Sequences:

>Translated_227_residues
MFRRPSVHYGKTPEPETPYQRAAQVWDERIGAARVQAKNWRFMAFGSLILSAGFAAALVWQSARGTIVPWVVQVDRLGQA
QAVAPAVADYRPTDPQIAFHLARFIEQVRSIPSDAIIVRQNWLRAYDFTTDRGAMALNDYARSNDPFTKVGRQQIAVDVS
SVIRASPDSFRVAWVERRYENGQLAETTRWTAILTIVMQVPRNADRLRANPLGIYVNAINWSRELGQ
>Mature_227_residues
MFRRPSVHYGKTPEPETPYQRAAQVWDERIGAARVQAKNWRFMAFGSLILSAGFAAALVWQSARGTIVPWVVQVDRLGQA
QAVAPAVADYRPTDPQIAFHLARFIEQVRSIPSDAIIVRQNWLRAYDFTTDRGAMALNDYARSNDPFTKVGRQQIAVDVS
SVIRASPDSFRVAWVERRYENGQLAETTRWTAILTIVMQVPRNADRLRANPLGIYVNAINWSRELGQ

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25700; Mature: 25700

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRRPSVHYGKTPEPETPYQRAAQVWDERIGAARVQAKNWRFMAFGSLILSAGFAAALVW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHEECCCEEEHHHHHHHHHHHHHHHHHH
QSARGTIVPWVVQVDRLGQAQAVAPAVADYRPTDPQIAFHLARFIEQVRSIPSDAIIVRQ
HCCCCCEEHHEEEHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
NWLRAYDFTTDRGAMALNDYARSNDPFTKVGRQQIAVDVSSVIRASPDSFRVAWVERRYE
HHHHHHCCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHEEEHHCC
NGQLAETTRWTAILTIVMQVPRNADRLRANPLGIYVNAINWSRELGQ
CCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEEECCHHHHCC
>Mature Secondary Structure
MFRRPSVHYGKTPEPETPYQRAAQVWDERIGAARVQAKNWRFMAFGSLILSAGFAAALVW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHEECCCEEEHHHHHHHHHHHHHHHHHH
QSARGTIVPWVVQVDRLGQAQAVAPAVADYRPTDPQIAFHLARFIEQVRSIPSDAIIVRQ
HCCCCCEEHHEEEHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
NWLRAYDFTTDRGAMALNDYARSNDPFTKVGRQQIAVDVSSVIRASPDSFRVAWVERRYE
HHHHHHCCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHEEEHHCC
NGQLAETTRWTAILTIVMQVPRNADRLRANPLGIYVNAINWSRELGQ
CCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]