Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 154246811

GI number: 154246811

Start: 3196931

End: 3197707

Strand: Direct

Name: yjbJ [H]

Synonym: Xaut_2873

Alternate gene names: 154246811

Gene position: 3196931-3197707 (Clockwise)

Preceding gene: 154246810

Following gene: 154246812

Centisome position: 60.22

GC content: 69.11

Gene sequence:

>777_bases
ATGCCGACGCGCCGCCCATCGCGCAGGCAACCGGTGGAGACCGGGCGGACACGCGCCGCCCGGCATCTCTCCGTCCTTCT
CCTTTCCGGCCTGCTGATCGTCAGCGGATCACCGGCCACCGCGCTGGCGCAGAACGCGACGACCTCGCGCGCAAGCCCAG
CCGATCCGTTCGCCGTCTTCATCGCCGAGGCTTCGCAACGCTTCGGCATTCCGGAGCGCTGGATTCGCGCCGTCATGCGT
GCCGAAAGCGCGGGCGACGTGCGCGCGATCTCATCCGCGGGCGCAATGGGTCTGATGCAGATCATGCCCCATACATGGAC
GGAGCTTCGCACACGCCACCGACTGGGGCGCGATCCTTACAGTCCGCGCGACAACATCCTCGCGGGCGCGGCCTACCTGC
GCGAGATGTATGATCGCTATGGTTCGCCAGGCTTCCTGGCCGCCTACAATGCGGGGCCGGGACGCTACGAGGAGTATCTC
GCCGGTCGCCCGCTCCCGGCCGAGACCCGCGCCTACGTCGCCGCGCTGGTCCCTTTATTCGGCGGCGGTGATCTCCCCAG
TCCAGTCGCCGTCGCCGTCGCCGATCCGCCACAGGCTTGGACCCGCGCCCCGCTGTTCGTCGCGCGTATCGAGCGCATCT
CGGCTGCCGATCCAGCGCAAACCCCGCACCATCCGGACGACGCTCCTGCGACACCTCCCGTGCGCGAGGTTTCCGCGATC
ATGCCGCAGTCCTCCGGCCTGTTCGTCGCGCGGCCTGATGGTCGAGGGCCGCAATGA

Upstream 100 bases:

>100_bases
CAACCGATCCGCGCCAACCTGTTCCAGTCCGGCGACGACAAGTCCGCCTGGGGCCTGCACTGGAACCGTCCGCCGAAGCG
CAATGAGCGGGACTGACGGC

Downstream 100 bases:

>100_bases
CCGCGCTCACTCGAGATCGCGGTCTGGCGTACTCCGGCGCATCATGGCGTGCGTGGAAGGGGGAGCGAGGCAACACGACC
GCACGATTGCCGCCCGTAAT

Product: lytic transglycosylase catalytic

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPTRRPSRRQPVETGRTRAARHLSVLLLSGLLIVSGSPATALAQNATTSRASPADPFAVFIAEASQRFGIPERWIRAVMR
AESAGDVRAISSAGAMGLMQIMPHTWTELRTRHRLGRDPYSPRDNILAGAAYLREMYDRYGSPGFLAAYNAGPGRYEEYL
AGRPLPAETRAYVAALVPLFGGGDLPSPVAVAVADPPQAWTRAPLFVARIERISAADPAQTPHHPDDAPATPPVREVSAI
MPQSSGLFVARPDGRGPQ

Sequences:

>Translated_258_residues
MPTRRPSRRQPVETGRTRAARHLSVLLLSGLLIVSGSPATALAQNATTSRASPADPFAVFIAEASQRFGIPERWIRAVMR
AESAGDVRAISSAGAMGLMQIMPHTWTELRTRHRLGRDPYSPRDNILAGAAYLREMYDRYGSPGFLAAYNAGPGRYEEYL
AGRPLPAETRAYVAALVPLFGGGDLPSPVAVAVADPPQAWTRAPLFVARIERISAADPAQTPHHPDDAPATPPVREVSAI
MPQSSGLFVARPDGRGPQ
>Mature_257_residues
PTRRPSRRQPVETGRTRAARHLSVLLLSGLLIVSGSPATALAQNATTSRASPADPFAVFIAEASQRFGIPERWIRAVMRA
ESAGDVRAISSAGAMGLMQIMPHTWTELRTRHRLGRDPYSPRDNILAGAAYLREMYDRYGSPGFLAAYNAGPGRYEEYLA
GRPLPAETRAYVAALVPLFGGGDLPSPVAVAVADPPQAWTRAPLFVARIERISAADPAQTPHHPDDAPATPPVREVSAIM
PQSSGLFVARPDGRGPQ

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 27735; Mature: 27604

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRRPSRRQPVETGRTRAARHLSVLLLSGLLIVSGSPATALAQNATTSRASPADPFAVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHCCCCCCCCCCCCHHHH
IAEASQRFGIPERWIRAVMRAESAGDVRAISSAGAMGLMQIMPHTWTELRTRHRLGRDPY
EEHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCC
SPRDNILAGAAYLREMYDRYGSPGFLAAYNAGPGRYEEYLAGRPLPAETRAYVAALVPLF
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
GGGDLPSPVAVAVADPPQAWTRAPLFVARIERISAADPAQTPHHPDDAPATPPVREVSAI
CCCCCCCCEEEEECCCCHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
MPQSSGLFVARPDGRGPQ
CCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
PTRRPSRRQPVETGRTRAARHLSVLLLSGLLIVSGSPATALAQNATTSRASPADPFAVF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHCCCCCCCCCCCCHHHH
IAEASQRFGIPERWIRAVMRAESAGDVRAISSAGAMGLMQIMPHTWTELRTRHRLGRDPY
EEHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCC
SPRDNILAGAAYLREMYDRYGSPGFLAAYNAGPGRYEEYLAGRPLPAETRAYVAALVPLF
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
GGGDLPSPVAVAVADPPQAWTRAPLFVARIERISAADPAQTPHHPDDAPATPPVREVSAI
CCCCCCCCEEEEECCCCHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
MPQSSGLFVARPDGRGPQ
CCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]