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The map label for this gene is rhrA [H]

Identifier: 154246733

GI number: 154246733

Start: 3111411

End: 3112307

Strand: Direct

Name: rhrA [H]

Synonym: Xaut_2794

Alternate gene names: 154246733

Gene position: 3111411-3112307 (Clockwise)

Preceding gene: 154246730

Following gene: 154246737

Centisome position: 58.61

GC content: 67.56

Gene sequence:

>897_bases
GTGCAGAATATTGCGCTCGCATTCCCTTTAGTTGCCTTGGGAGGCGCTGGTCTCAACACGGATGGTGAACAATCCAAGGA
GGAAACGGCTTCCCCGTTCCAGGCCACGGCCCTGCATACAGTTGCGATTATTGGCGGAAAGGCGGAGGTTTCCGGCAATT
TTCACGTCGCCTCGTCGCCGGAGCCGGGGGTTTTCATCGGCAGGTGTTTCGAATCTGCCACGGTGCGTATCGATGACATG
CAACCGGTCGCCATCGAGGCCGGCCGGGCCTTCCTCGGGGTGGTCGCGCGGGAGGCCGAGCTGCAGTACGCGGCCGGCGA
GGTGACCCTGGTGCTGCTCCCGCGCCAGGTGCTGAAGCTCGCCGACGCGCTCAAGGCGGTGCCGTTCGGGGTTTCGGCCG
GGCCCGACCCGGCGCTGGATATCCTGGTCTCGCACGCCGCGGGGCTTCTTGGCCGCACGCTGCCGCCCGCCCTGGCCCTG
TTCTGCGAAAGCGCGCTGCTCGGCCTCCTCGCCTTCGCCGCCGGACCCGGCGGCAGCGCCCCTGCGCGCGGGCCGGACGG
CCGGGATGCGCTCTACCAGGAGATCCTGCTCGACATCGCCGCCAATTGCAGCCGGCACGATTTCGGCGTGTCGCAGGTGG
CGCAGCGCCACAAGATCAATGTGCGCACCCTGCAGAAGATGTTCCAGCAGCACGGTGTGACCCTGAAGGAACACCTCACC
TGGTCGCGCCTGCAACTCGCCCGCAGCGCCCTGGCCGATCCCGCCAACGCGGGCAAGAAGGTGTCCGACATCGCGTTCGA
GGCCGGCTTCAACGACATCGCCACCTTCAACCGGCTGTTCCGCAGAAGCTTCGGGCGCACGCCCTCGTCCCTGCGCCAGC
GCGACGGCGGGTCGTGA

Upstream 100 bases:

>100_bases
TTGTATTGTTCTCCGCTGCGGCATGGGGAGCGGCCGCCGGGTCATGAACAGCACAACCAAAGCGGGAAAGCACAACAACA
TAAGTATTGGTGAAAATGCG

Downstream 100 bases:

>100_bases
CCGGGGGCCGTTCCAGGGCGTTGCGGGTGGGGTGTCGGCGCCGCCTCCACCGGGACGCGATGGCCCGCTGACCGGGCGCG
GCCCCGGTGGCCGGGTCGCA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MQNIALAFPLVALGGAGLNTDGEQSKEETASPFQATALHTVAIIGGKAEVSGNFHVASSPEPGVFIGRCFESATVRIDDM
QPVAIEAGRAFLGVVAREAELQYAAGEVTLVLLPRQVLKLADALKAVPFGVSAGPDPALDILVSHAAGLLGRTLPPALAL
FCESALLGLLAFAAGPGGSAPARGPDGRDALYQEILLDIAANCSRHDFGVSQVAQRHKINVRTLQKMFQQHGVTLKEHLT
WSRLQLARSALADPANAGKKVSDIAFEAGFNDIATFNRLFRRSFGRTPSSLRQRDGGS

Sequences:

>Translated_298_residues
MQNIALAFPLVALGGAGLNTDGEQSKEETASPFQATALHTVAIIGGKAEVSGNFHVASSPEPGVFIGRCFESATVRIDDM
QPVAIEAGRAFLGVVAREAELQYAAGEVTLVLLPRQVLKLADALKAVPFGVSAGPDPALDILVSHAAGLLGRTLPPALAL
FCESALLGLLAFAAGPGGSAPARGPDGRDALYQEILLDIAANCSRHDFGVSQVAQRHKINVRTLQKMFQQHGVTLKEHLT
WSRLQLARSALADPANAGKKVSDIAFEAGFNDIATFNRLFRRSFGRTPSSLRQRDGGS
>Mature_298_residues
MQNIALAFPLVALGGAGLNTDGEQSKEETASPFQATALHTVAIIGGKAEVSGNFHVASSPEPGVFIGRCFESATVRIDDM
QPVAIEAGRAFLGVVAREAELQYAAGEVTLVLLPRQVLKLADALKAVPFGVSAGPDPALDILVSHAAGLLGRTLPPALAL
FCESALLGLLAFAAGPGGSAPARGPDGRDALYQEILLDIAANCSRHDFGVSQVAQRHKINVRTLQKMFQQHGVTLKEHLT
WSRLQLARSALADPANAGKKVSDIAFEAGFNDIATFNRLFRRSFGRTPSSLRQRDGGS

Specific function: Transcriptional activator of the rhizobactin regulon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31371; Mature: 31371

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIALAFPLVALGGAGLNTDGEQSKEETASPFQATALHTVAIIGGKAEVSGNFHVASSP
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHEEECCCEEECCCEEECCCC
EPGVFIGRCFESATVRIDDMQPVAIEAGRAFLGVVAREAELQYAAGEVTLVLLPRQVLKL
CCCEEHEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
ADALKAVPFGVSAGPDPALDILVSHAAGLLGRTLPPALALFCESALLGLLAFAAGPGGSA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PARGPDGRDALYQEILLDIAANCSRHDFGVSQVAQRHKINVRTLQKMFQQHGVTLKEHLT
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
WSRLQLARSALADPANAGKKVSDIAFEAGFNDIATFNRLFRRSFGRTPSSLRQRDGGS
HHHHHHHHHHHCCCHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MQNIALAFPLVALGGAGLNTDGEQSKEETASPFQATALHTVAIIGGKAEVSGNFHVASSP
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHEEECCCEEECCCEEECCCC
EPGVFIGRCFESATVRIDDMQPVAIEAGRAFLGVVAREAELQYAAGEVTLVLLPRQVLKL
CCCEEHEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
ADALKAVPFGVSAGPDPALDILVSHAAGLLGRTLPPALALFCESALLGLLAFAAGPGGSA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PARGPDGRDALYQEILLDIAANCSRHDFGVSQVAQRHKINVRTLQKMFQQHGVTLKEHLT
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
WSRLQLARSALADPANAGKKVSDIAFEAGFNDIATFNRLFRRSFGRTPSSLRQRDGGS
HHHHHHHHHHHCCCHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11274118; 11481432 [H]