| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is uvrB [H]
Identifier: 154246683
GI number: 154246683
Start: 3037680
End: 3040280
Strand: Direct
Name: uvrB [H]
Synonym: Xaut_2744
Alternate gene names: 154246683
Gene position: 3037680-3040280 (Clockwise)
Preceding gene: 154246680
Following gene: 154246684
Centisome position: 57.22
GC content: 67.4
Gene sequence:
>2601_bases ATGGCCAAAGCATCCCGTCCCGGTAAGCTCGGAGAGCGCTCCCAGCGTCATTTCGAGCCGGCGCCCCAGCAGGCGCTGGA TCCTGAACTCGCACAGTCCCTCGGGCTCGCACCCGGGGACGTGAGCCTCGATTTCGGGTCCGCCGGGGCCTCCGCCACGG TGCAGGCGCTGTCGCAGCTGATCGAGAACGGGCGGCCGGAGGTCAACGGCCAGACCTGGGTGCCCCATCGTCCGCCGCGT CCGGAGAAGTCCGAGGGCGGCGTCAGCTTCATCATGAAGAGCGATTTCGAGCCCGCCGGCGACCAGCCGCAGGCCATCGC CGAGCTGTGCGCCCAGGCGCAGGCCGGCGAGCGCGACCAGGTGCTGCTAGGCGTCACCGGATCGGGCAAGACCTTCACCA TGGCCAAGGTAATCGAGCAGCTCCAGCGCCCGGCCATCGTGCTCGCACCCAACAAGACGCTGGCGGCCCAGCTCTATGGC GAGTTCAAGAGCTTTTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTACTACCAGCCGGAGGCCTATGT ACCCCGGACGGATACCTATATCGAGAAGGAATCCTCCATCAACGAGCAGATCGACCGCATGCGCCATGCGGCGACACGTG CCCTTCTGGAGCGCGACGATGTGATCATCGTCGCCTCGGTGTCGTGCATCTACGGCATCGGCTCGGTCGAGACCTATTCG GCCATGACCTTCGACATCAAGGTGGGCGAGCGCATCGACCAGCGCGGCCTGCTGGCCGATCTCGTGGCCCTGCAATACAA GCGCATCCAGTCGGATTTCGCCCGCGGCACCTTCCGGGTGCGCGGCGACGTGGTGGAGATCTTCCCCGCCCACTACGAGG ATCGCGCCTGGCGCGTCTCCCTGTTCGGCGACGAAGTGGAGAGCATCGCCGAGTTCGACCCGCTCACCGGCCACAAGAGC GGTGACATGAAGAGCGTGCGCGTCTACGCCGCCTCCCATTACGTCACCCCGCGTCCGACGCTGATCCAGGCCATCACCGG CATCAAGGCCGAGCTGAAGATGCGCCTCGACGAGCTCTACAAGATGGGCCGCCTGCTGGAGGCCCAGCGGCTGGAGCAGC GCACCCGATACGACCTTGAGATGATGGAGGCCACCGGCAGTTGCGCCGGCATCGAGAATTATTCGCGCTGGCTCACCGGC CGCAAGCCGGGCGAGCCGCCGCCGACCCTGTTCGAATATGTGCCCGACAATTCCCTCGTCTTCATCGACGAGAGCCATGT GACCGTGCCGCAGATCGGCGCCATGTATCGCGGCGACTTCCGCCGCAAGGCGACGCTGGCGGAATACGGCTTCCGCCTGC CGAGCTGCATGGACAATCGCCCGCTGCGCTTCGAGGAATGGGAGGCCATGCGGCCGCAGACGGTCCATGTCTCCGCCACC CCCGGCACCTGGGAGATGGAGAAGACCGGCGGCGTGTTCGTGGAGCAGGTGATCCGGCCCACGGGGCTGATCGATCCGCC GGTGGAAGTGCGCCCCGCCCGCACCCAGGTGGACGATCTGCTGGGCGAAGTGCGGGCCTTCGCGGCGAAAGGTTACCGTA CGCTGGTGACGGTACTCACCAAGCGCATGGCCGAGGACCTCACCGAATATCTGCACGAGCACGGCATCCGCGTGCGTTAC ATGCATTCCGATATCGACACCATCGAGCGCATCGAGATCATCCGCGACCTCAGGCTTGGGGCGTTCGACGTGCTCATCGG CATCAACCTGCTGCGCGAGGGCCTCGACATCCCGGAGTGTGGGCTGGTGGCCATCCTGGACGCGGACAAGGAAGGCTTCC TGCGCTCGGAGACCTCGCTGGTGCAGACCATCGGCCGCGCTGCCCGCAACGTGGACGGCCGCGTCATCCTCTATGCCGAC CGGGTCACCGGCTCCATGGAGCGGGCCATGGCAGAGACCTCCCGCCGCCGCGAGAAGCAGGTAGCCTACAACACCGCCCA CGGCATCACGCCGGAGAGCGTGAAGAAGGCCATCGGCGACATTCTCAATTCCGTCTACGAGCGCGACCACGTGCAGGTGG ATGCGGGCCTGGCGGAGGAGGGGGCCGCCTTCGGGCACAACCTCAAGGCGGTGATGGCGGACCTGGAGAAGCGGATGCGC GCCGCCGCCGCGGACCTCGACTTCGAGACCGCCGCCCGCCTGCGCGACGAGATCCGCCGGCTGGAGGCGACCGAGCTGGC GGTGGCCGACGATCCCCTCGCCCGGCAGGAGGCGGTGGAGGACAAGTCCGGCGGCTTCCGGGGTCCGCGCAAATACGGCA AGGCGGCCAACCTGCCGCCCAAGGAAGACGCCGGCAAGCTCTTGCCGCGCGGCCGCGGGGCGGGGCGCAAGCCGCGCTCT GAACCCGATGACGAAGGGATGGGCGAGGAGCAGGCGGGCTACACCGCTCCGGTCACCCGCGCCCACAAGCCCTCCCTCGA CGACATGGGTCCCGGCTCGGACCGCGCCGTGCCCATCACGGAAGACACCTTCCGCCCCGGCCCGCGCCCCGATCCCGGCA CCAAGGGCTACCGGAAGGGCGGGCGACGGTCGAAGGGGTAA
Upstream 100 bases:
>100_bases TTTTGCATCACTGGATGCATGACATTTTCCGAACTTTGGCGACGCGAGGTCTCGCGCTCTGCGTCTTTCCTAACGGGGGG ATCGCCCCCATATTCCCCCT
Downstream 100 bases:
>100_bases AACCAAGGGCCCGTAAACAAAGCTCACGGGCCCTTGGTAAAGCTCGCGCGGCGCTTGAGCGGAGCCACTTGGCGTCGGTC AATGACCGAGGCCGATGGTA
Product: excinuclease ABC subunit B
Products: NA
Alternate protein names: Protein uvrB; Excinuclease ABC subunit B [H]
Number of amino acids: Translated: 866; Mature: 865
Protein sequence:
>866_residues MAKASRPGKLGERSQRHFEPAPQQALDPELAQSLGLAPGDVSLDFGSAGASATVQALSQLIENGRPEVNGQTWVPHRPPR PEKSEGGVSFIMKSDFEPAGDQPQAIAELCAQAQAGERDQVLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYG EFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYS AMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWRVSLFGDEVESIAEFDPLTGHKS GDMKSVRVYAASHYVTPRPTLIQAITGIKAELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTG RKPGEPPPTLFEYVPDNSLVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSAT PGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAKGYRTLVTVLTKRMAEDLTEYLHEHGIRVRY MHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYAD RVTGSMERAMAETSRRREKQVAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMR AAAADLDFETAARLRDEIRRLEATELAVADDPLARQEAVEDKSGGFRGPRKYGKAANLPPKEDAGKLLPRGRGAGRKPRS EPDDEGMGEEQAGYTAPVTRAHKPSLDDMGPGSDRAVPITEDTFRPGPRPDPGTKGYRKGGRRSKG
Sequences:
>Translated_866_residues MAKASRPGKLGERSQRHFEPAPQQALDPELAQSLGLAPGDVSLDFGSAGASATVQALSQLIENGRPEVNGQTWVPHRPPR PEKSEGGVSFIMKSDFEPAGDQPQAIAELCAQAQAGERDQVLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYG EFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYS AMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWRVSLFGDEVESIAEFDPLTGHKS GDMKSVRVYAASHYVTPRPTLIQAITGIKAELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTG RKPGEPPPTLFEYVPDNSLVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSAT PGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAKGYRTLVTVLTKRMAEDLTEYLHEHGIRVRY MHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYAD RVTGSMERAMAETSRRREKQVAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMR AAAADLDFETAARLRDEIRRLEATELAVADDPLARQEAVEDKSGGFRGPRKYGKAANLPPKEDAGKLLPRGRGAGRKPRS EPDDEGMGEEQAGYTAPVTRAHKPSLDDMGPGSDRAVPITEDTFRPGPRPDPGTKGYRKGGRRSKG >Mature_865_residues AKASRPGKLGERSQRHFEPAPQQALDPELAQSLGLAPGDVSLDFGSAGASATVQALSQLIENGRPEVNGQTWVPHRPPRP EKSEGGVSFIMKSDFEPAGDQPQAIAELCAQAQAGERDQVLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYGE FKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYSA MTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWRVSLFGDEVESIAEFDPLTGHKSG DMKSVRVYAASHYVTPRPTLIQAITGIKAELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTGR KPGEPPPTLFEYVPDNSLVFIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSATP GTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAKGYRTLVTVLTKRMAEDLTEYLHEHGIRVRYM HSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADR VTGSMERAMAETSRRREKQVAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMRA AAADLDFETAARLRDEIRRLEATELAVADDPLARQEAVEDKSGGFRGPRKYGKAANLPPKEDAGKLLPRGRGAGRKPRSE PDDEGMGEEQAGYTAPVTRAHKPSLDDMGPGSDRAVPITEDTFRPGPRPDPGTKGYRKGGRRSKG
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA
COG id: COG0556
COG function: function code L; Helicase subunit of the DNA excision repair complex
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Escherichia coli, GI1786996, Length=677, Percent_Identity=59.6750369276219, Blast_Score=792, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR001943 - InterPro: IPR004807 - InterPro: IPR009055 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 96133; Mature: 96002
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: PS50151 UVR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKASRPGKLGERSQRHFEPAPQQALDPELAQSLGLAPGDVSLDFGSAGASATVQALSQL CCCCCCCCCCCCHHHHCCCCCCHHHCCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH IENGRPEVNGQTWVPHRPPRPEKSEGGVSFIMKSDFEPAGDQPQAIAELCAQAQAGERDQ HHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC VLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDY EEEEECCCCCEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH YQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYS CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCE AMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWRVS EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCEEEE LFGDEVESIAEFDPLTGHKSGDMKSVRVYAASHYVTPRPTLIQAITGIKAELKMRLDELY ECCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH KMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTGRKPGEPPPTLFEYVPDNSLV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCEE FIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSAT EEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEC PGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAKGYRTLVTVLT CCCEEEHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH KRMAEDLTEYLHEHGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPEC HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC GLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRVTGSMERAMAETSRRREKQ CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH VAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMR HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHCCHHHCCHHHHHHHHHHHHHH AAAADLDFETAARLRDEIRRLEATELAVADDPLARQEAVEDKSGGFRGPRKYGKAANLPP HHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCC KEDAGKLLPRGRGAGRKPRSEPDDEGMGEEQAGYTAPVTRAHKPSLDDMGPGSDRAVPIT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC EDTFRPGPRPDPGTKGYRKGGRRSKG CCCCCCCCCCCCCCCHHHCCCCCCCC >Mature Secondary Structure AKASRPGKLGERSQRHFEPAPQQALDPELAQSLGLAPGDVSLDFGSAGASATVQALSQL CCCCCCCCCCCHHHHCCCCCCHHHCCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH IENGRPEVNGQTWVPHRPPRPEKSEGGVSFIMKSDFEPAGDQPQAIAELCAQAQAGERDQ HHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC VLLGVTGSGKTFTMAKVIEQLQRPAIVLAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDY EEEEECCCCCEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH YQPEAYVPRTDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYS CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCE AMTFDIKVGERIDQRGLLADLVALQYKRIQSDFARGTFRVRGDVVEIFPAHYEDRAWRVS EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCCCCCCEEEE LFGDEVESIAEFDPLTGHKSGDMKSVRVYAASHYVTPRPTLIQAITGIKAELKMRLDELY ECCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH KMGRLLEAQRLEQRTRYDLEMMEATGSCAGIENYSRWLTGRKPGEPPPTLFEYVPDNSLV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCEE FIDESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSAT EEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEC PGTWEMEKTGGVFVEQVIRPTGLIDPPVEVRPARTQVDDLLGEVRAFAAKGYRTLVTVLT CCCEEEHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH KRMAEDLTEYLHEHGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPEC HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC GLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRVTGSMERAMAETSRRREKQ CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH VAYNTAHGITPESVKKAIGDILNSVYERDHVQVDAGLAEEGAAFGHNLKAVMADLEKRMR HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCHHCCHHHCCHHHHHHHHHHHHHH AAAADLDFETAARLRDEIRRLEATELAVADDPLARQEAVEDKSGGFRGPRKYGKAANLPP HHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCC KEDAGKLLPRGRGAGRKPRSEPDDEGMGEEQAGYTAPVTRAHKPSLDDMGPGSDRAVPIT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC EDTFRPGPRPDPGTKGYRKGGRRSKG CCCCCCCCCCCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]