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The map label for this gene is yafC [H]

Identifier: 154246658

GI number: 154246658

Start: 3013944

End: 3014876

Strand: Direct

Name: yafC [H]

Synonym: Xaut_2719

Alternate gene names: 154246658

Gene position: 3013944-3014876 (Clockwise)

Preceding gene: 154246653

Following gene: 154246662

Centisome position: 56.77

GC content: 70.74

Gene sequence:

>933_bases
TTGGACAATCGCGCGGGCGAGATGGTGGTGTTCGTGGCGGCGGCGGAAACGCAGGGCTTTTCGGCCGCCGGCCGCAAGCT
CGGCCTGTCGCCGTCCGCCGTGAGCAAGCTGGTGACGCGGCTGGAGGATCGGCTGGGCACGCCCCTGTTCGTGCGCTCCA
CCCGGCAATTGCAGCTCACCGCCGAGGGCGCGCTCTATCTGGAGCGGGCGCGGCGCATCCTCGCCGAGATCGACGACACC
GAGCGCCTGATCGCCACCGGCGCCGGGGCGGTGCCGCGCGGGCGGCTGCGCATCAGCGCCTCGGTGGCGTTCGGCGAGAT
GTGCGTGCTGCCCCGCGTGCCGCGCTTTCTCGAACTCTATCCGCAGGTGGAGCTGGACATCTCCCTGAGCGATGCGGTCA
TCGACCTGGTGGACGAGCGCACCGACATCGCTATCCGCACCGGTCGGCTGAGGGATTCGACCCTGAAGGCGCGGAAGCTG
TTCGAGATCGGCCGGGTCATCGTGGCCTCGCCCGCCTATCTGGAGCGCCACGGCGTGCCGCAGCATCCCGAAGACCTCGC
GCGGCACCTGTGCCTGTGCTTCAACTTCCGCCGCTCGCCGGAGGACTGGCCGTTCCGCGATCCCGAGAGCGGCAAGGCCT
TCACCCAGGCGGTTTCAGGCACGGCGCTGGGTAACAGCGGCGTGGTGCTGCGCCGGCTGGCCCTCGACGGGGCGGGGCTG
GCGCGCCTCGGCCGCTATCACGTGCGGGGCGACCTCGCCGCCGGAACGCTGGTGAGCGTGCTGGAGGAGTTCAACGCCGG
CGACATCGAGCCCATCCACGCGGTCTATGTGGGCCACGCGCACCTCGCCGCCCGCATTCGCGCCTTCGTGGACTTCCTCG
CCGACGCCATCAGGCAGGAGACGGAACCGACGGAAGGCTCAGGCGGGCGTTAG

Upstream 100 bases:

>100_bases
ACTTGCACCGCAACATGAGCGCCCTTGCGCTTTTACTGAACCGCCTATTATGTAAAAGCGGCTTTGAATTCGGTTCACAG
CTGCTGGCGAGGCGGGCCCC

Downstream 100 bases:

>100_bases
ATCCAGAGCGTCGCGCAAGAGCAGGGCGATGTGGCGGGCCTTGCGGCCGGAGCCGTGCTCGATCTGGTGGCGGCAGGAAA
AGCCGTTGGCGATGAGCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDNRAGEMVVFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLTAEGALYLERARRILAEIDDT
ERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELYPQVELDISLSDAVIDLVDERTDIAIRTGRLRDSTLKARKL
FEIGRVIVASPAYLERHGVPQHPEDLARHLCLCFNFRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGL
ARLGRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHLAARIRAFVDFLADAIRQETEPTEGSGGR

Sequences:

>Translated_310_residues
MDNRAGEMVVFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLTAEGALYLERARRILAEIDDT
ERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELYPQVELDISLSDAVIDLVDERTDIAIRTGRLRDSTLKARKL
FEIGRVIVASPAYLERHGVPQHPEDLARHLCLCFNFRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGL
ARLGRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHLAARIRAFVDFLADAIRQETEPTEGSGGR
>Mature_310_residues
MDNRAGEMVVFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLTAEGALYLERARRILAEIDDT
ERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELYPQVELDISLSDAVIDLVDERTDIAIRTGRLRDSTLKARKL
FEIGRVIVASPAYLERHGVPQHPEDLARHLCLCFNFRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGL
ARLGRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHLAARIRAFVDFLADAIRQETEPTEGSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=37.9194630872483, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=35.3951890034364, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=30.976430976431, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.0580204778157, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=306, Percent_Identity=31.6993464052288, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1787128, Length=299, Percent_Identity=28.0936454849498, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=27.681660899654, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789173, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=28.2828282828283, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788706, Length=189, Percent_Identity=29.1005291005291, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=25.0836120401338, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=154, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33817; Mature: 33817

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNRAGEMVVFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLT
CCCCCCCEEEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
AEGALYLERARRILAEIDDTERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELY
ECHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHCCCCCHHHHHC
PQVELDISLSDAVIDLVDERTDIAIRTGRLRDSTLKARKLFEIGRVIVASPAYLERHGVP
CCEEEEEEHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHEECCCHHHHHCCCC
QHPEDLARHLCLCFNFRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGL
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEHHCCCCCH
ARLGRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHLAARIRAFVDFLADAIRQE
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHC
TEPTEGSGGR
CCCCCCCCCC
>Mature Secondary Structure
MDNRAGEMVVFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLT
CCCCCCCEEEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
AEGALYLERARRILAEIDDTERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELY
ECHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHCCCCCHHHHHC
PQVELDISLSDAVIDLVDERTDIAIRTGRLRDSTLKARKLFEIGRVIVASPAYLERHGVP
CCEEEEEEHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHEECCCHHHHHCCCC
QHPEDLARHLCLCFNFRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGL
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEHHCCCCCH
ARLGRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHLAARIRAFVDFLADAIRQE
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHC
TEPTEGSGGR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]