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The map label for this gene is ymdB [C]

Identifier: 154245828

GI number: 154245828

Start: 2124064

End: 2124645

Strand: Reverse

Name: ymdB [C]

Synonym: Xaut_1884

Alternate gene names: 154245828

Gene position: 2124645-2124064 (Counterclockwise)

Preceding gene: 154245830

Following gene: 154245827

Centisome position: 40.02

GC content: 70.62

Gene sequence:

>582_bases
ATGGCCCAGCCCCCCGAATTCCGCATCGCGTCCGGTGCGGTTGCCGGCCCCCGGCAGGCGCGGCTCGACATCGTGGTGGG
CGACATCACCCGCCTCGCCCTCGATGCCATCGTCAACGCGGCCAATTCCAGCCTGCTCGGCGGTGGCGGGGTGGATGGAG
CGATCCACCGGGCGGCGGGGCCTGAGCTTCTCGCCTATTGCCGTACCCTCGGCGGCTGCCCCACGGGCGAGGCTCGCCTG
ACGCCGGGCTTTCGCCTGCCGGCGGCCCATGTGATCCACACCGTAGGTCCGGTATGGCACGGCGGCGGCGCGGGCGAGGA
GGGGCTTCTAGGCTCCTGCTACCGCGAGAGCCTGAAGCTCGCGGATGGGGCCGGGCTTGCCTCCATCGCCTTCCCTGCGA
TCTCCACCGGCATCTATGGATTTCCAGCCGATCGCGCCGCGCCACTGGCGGTCGGCACCGTGCTGGCCCATCTTGGGGCA
CCCGGCAGTGTCACCCGCGTGGTGTTCTGCTGCTTTTCGCAAGAGGCCGCCGACCTTCATCATGACGCCTTCCGCGCCCA
CGGCATCACCCCGTCCGCCTGA

Upstream 100 bases:

>100_bases
CCGCCGGCATATTCAGAAAACGTGGAGATACGACGATGTTGACGCCCATGTGATCGCGGACCTGTAATGCCGGAACAGCC
CGCCCCGGAGGGACCTTGCC

Downstream 100 bases:

>100_bases
GCCCGCCCCCGACCTGCCGGTGCTTTACCGCGACGGCATGATGTTGATCATCGACAAGCCCCACGGCCTGCCGGTCCATG
CCGGCCCCAAGGGCGGGGAG

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAQPPEFRIASGAVAGPRQARLDIVVGDITRLALDAIVNAANSSLLGGGGVDGAIHRAAGPELLAYCRTLGGCPTGEARL
TPGFRLPAAHVIHTVGPVWHGGGAGEEGLLGSCYRESLKLADGAGLASIAFPAISTGIYGFPADRAAPLAVGTVLAHLGA
PGSVTRVVFCCFSQEAADLHHDAFRAHGITPSA

Sequences:

>Translated_193_residues
MAQPPEFRIASGAVAGPRQARLDIVVGDITRLALDAIVNAANSSLLGGGGVDGAIHRAAGPELLAYCRTLGGCPTGEARL
TPGFRLPAAHVIHTVGPVWHGGGAGEEGLLGSCYRESLKLADGAGLASIAFPAISTGIYGFPADRAAPLAVGTVLAHLGA
PGSVTRVVFCCFSQEAADLHHDAFRAHGITPSA
>Mature_192_residues
AQPPEFRIASGAVAGPRQARLDIVVGDITRLALDAIVNAANSSLLGGGGVDGAIHRAAGPELLAYCRTLGGCPTGEARLT
PGFRLPAAHVIHTVGPVWHGGGAGEEGLLGSCYRESLKLADGAGLASIAFPAISTGIYGFPADRAAPLAVGTVLAHLGAP
GSVTRVVFCCFSQEAADLHHDAFRAHGITPSA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=156, Percent_Identity=55.1282051282051, Blast_Score=168, Evalue=2e-42,
Organism=Homo sapiens, GI13569840, Length=163, Percent_Identity=49.6932515337423, Blast_Score=157, Evalue=4e-39,
Organism=Homo sapiens, GI207450721, Length=145, Percent_Identity=40, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI8923143, Length=145, Percent_Identity=40, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI154813199, Length=133, Percent_Identity=41.3533834586466, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI20336746, Length=166, Percent_Identity=31.9277108433735, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371718, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371716, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371714, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371712, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371710, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI226371706, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI93141018, Length=169, Percent_Identity=29.585798816568, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI93141020, Length=169, Percent_Identity=29.585798816568, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4758496, Length=169, Percent_Identity=29.585798816568, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787283, Length=174, Percent_Identity=50, Blast_Score=162, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=172, Percent_Identity=43.6046511627907, Blast_Score=134, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=35.031847133758, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19464; Mature: 19333

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPPEFRIASGAVAGPRQARLDIVVGDITRLALDAIVNAANSSLLGGGGVDGAIHRAAG
CCCCCCCEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCC
PELLAYCRTLGGCPTGEARLTPGFRLPAAHVIHTVGPVWHGGGAGEEGLLGSCYRESLKL
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
ADGAGLASIAFPAISTGIYGFPADRAAPLAVGTVLAHLGAPGSVTRVVFCCFSQEAADLH
CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
HDAFRAHGITPSA
HHHHHHCCCCCCC
>Mature Secondary Structure 
AQPPEFRIASGAVAGPRQARLDIVVGDITRLALDAIVNAANSSLLGGGGVDGAIHRAAG
CCCCCCEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCC
PELLAYCRTLGGCPTGEARLTPGFRLPAAHVIHTVGPVWHGGGAGEEGLLGSCYRESLKL
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
ADGAGLASIAFPAISTGIYGFPADRAAPLAVGTVLAHLGAPGSVTRVVFCCFSQEAADLH
CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
HDAFRAHGITPSA
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]