| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is ybbP [H]
Identifier: 154245701
GI number: 154245701
Start: 1980211
End: 1982766
Strand: Reverse
Name: ybbP [H]
Synonym: Xaut_1757
Alternate gene names: 154245701
Gene position: 1982766-1980211 (Counterclockwise)
Preceding gene: 154245702
Following gene: 154245700
Centisome position: 37.35
GC content: 72.57
Gene sequence:
>2556_bases ATGGCGGCGTTCGTCGCCGCCGCTCCCCGATTTCCCCGGTCCCTGCGCTTCGCCTTGCGTGAATTGCGCGGGGCGCGGCG GGGCTTCGGCGTGTTCCTCGGTTGCCTGGTGCTGGGCGTGATGGCCATTGCCGGCATCGGCTCCTTTGCCGGCGCGCTCA CCCAGGGGCTGGAGCGGGAGGGTCGCGCCATCCTCGGCGGCGATGCCGCCTTCACCCTGGTGCAGCGCGAGGCGAGCGCC GACGAGCGCGCCGTGCTCGAAAGCGCCGGCACGCTCGGCACCACCGCCTTGCTGCGGGTCATGGCCCGCACCGCCGGAGG TGACGCGGCGCTGGCCGAGGTGAAGGCGGTGGACGGTCGCTATCCCCTGGTGGGGCAGGTGGCACTCAGCCCGCCCGCGC CGATCGCCGAGGTGCTGGGGGAAAAGGGCGGCTTCTATGGCGCGGCGGCGGACCCGGTGCTGCTCGGCCGGCTCGGCCTG AAGGTGGGCGACCGCCTGCTTTTGGGCGATGCCATGGTGGAGGTGCGTGCCGTGCTCGACAGCGAGCCGGACAAGCTCTC CTCCGGCATCGGCTTCGGCGCGCGGCTCCTGGTGTCGCAGGCGGTGCTGCCGCAGACCCGGCTGATCCAGCCGGGAAGCC TGGTGCGCTGGAGCTATCGCGTGGCGCTGGCCGATCCCGCGCCGGCGGCCCTCACCGCCTTCATGGATGCCACCCGCGAG CGCTTCGGCGCGGCGGGCTTCGACATGCGCACCCGCGACGGCGCCACCCCGCAACTCGCCCGCAACGTGCGGCGCATCAG CCAGTTCCTGGCGCTGGTGGCGCTCACCGCGCTCATGGTGGGCGGGGTGGGGGTCGCCAATGCAGTGTCGAGCCATCTGG CGGCCAAGCGCGAGGTCATCGCCACCCTGAAGGCGGTGGGGGCGACGCGGCGGGACATCTTCCTCATCTATGCCGCCGAG ATCGGGCTCATCGCGGCTCTGGGCATCGGTATTGGTCTTGTGCTGGGGGCGGCGCTGCCGTTCGCGGCGAGTGCGGCCAT CGGCGCTTTGGTGCCGTTTCCGCTGGAGCCGCGCATCGATCCGGCGGCGCTGGCGCTGGCAGCGCTCTATGGTGTGCTGG TGTCGGCCCTGTTCTCATTGCTGCCGCTGGCGCGGGCGCAGCAGGCGCGGGTTTCCGCCCTGTTCCGCGACGCCATCGGC GAGCCGGCGGCGAAGGTCGGCGTCGGCACTTTTCTCGCGGTGGCGGGGGTGGGCGCGGCGCTGGTGGTGCTGGCGATGGC AACGTCCGAGGACCGGCGCGCCGCCGCCGTCTTCCTTGGCGCGGCGGCTTTGGTCTTCCTGCTGCTGCGCGGGGTCGCCG CCGGCCTGATGGCGCTGGCCCGCCGGGCGCCCCGGCCCAAGGATGCCATGGTGCGCCTTGCGCTGGCCAATGTGTACCGG CCGGGGGCGCTGACGCCGTCCGTGGTGCTGTCCCTGGGGCTCGGCCTGTCGCTGATGGTGGGCATCGCCCTCATCGATGC GAGCCTGAGCCGGGAACTGGCCGGCCCGCTGCGGCAGGCGGCGCCGAGCTTCTTCTTCGTGGATGTGCCCAGCGGCGAGG AAGCGGAGTTCCGCGCCTTCCTGGCGGCAACCGCCCCCGGCGCCGAGGTGAAGGCGGTGCCCATGCTGCGCGGGCGCATT ACCAGGGTGAAGGACACCCCCGCCGAGGAGGTGAAGCCGCGCGCCGATGCCGCCTGGGTGCTGCAGAGCGATCGTGGCAT CTCCAGCGCCGCCGAGGTGCCCGAGGGCTCGCGGGTGGTGGCAGGCCAATGGTGGACCGGCGACGAGACCGAGCCCCTGG TCTCCTTCGACGCGGAGCTGGCCAAGGGCCTCGGCCTCGCGCTGGGGGACAGCGTGACGGTGAACGTGCTCGGCCGCTCC ATCACCGCGCGCATCGCCAATCTGCGGGAGGTGAAGTGGGAGCGGCTCGGCATCAATTTCGTCATGGTGTTCTCGCCGGC CACCTTCGCCGGGGCGCCGCACACCGTGCTCGCCACCCTCACCTTTCCCGATGGCGGCGACACCGCGCGGGAGGTGGCCC TGCTGAAGGCAGTGGCGGGGCGGTTCCCGGCCATCACCACGGTGCGGGTGAAGGAGACGCTGGAGGAGGCCCAGCGCATG CTGGACAACCTGTCGCTCGGCATCCGCGCGGCGAGCCTCGTCACCCTCATCACCTCGGTGCTGGTGCTGGCCGGCGCGCT GGCGGCGGGGCGCGAGGGCCGCATCTATGATGCGGTGATCCTGAAGACGTTGGGGGCGACGCGGGGCCGGCTCATGTTCG CCTATGGCCTCGAATATGCGGGGCTCGGGCTCGCCACCGCGCTGGTGGCGGTGGCGGCGGGCAGCCTTGCCGCCTTCGCG GTGGTGACGCAGGTGATGGACATCGGCTTCAGCTTCTCCCTGCCGGCAGCCATGGGGGCAGTCATCGGCGCGCTGGTGGT CACCGTGGGCGTCGGCCTGGCCGGAACCCTGCGGGCACTTTCGGTGCCGCCGGCGCGGGTGCTGCGGCATCTGTGA
Upstream 100 bases:
>100_bases CGGCTTTGGCGCGGCGCTGCCAGCGGGTGCTGTCCCTGCATTCCGGCGTGGTGAAGGACGACAGCGCGATGGCGCCGCGC GCCGGCGCGGAGGCGCTGTG
Downstream 100 bases:
>100_bases GGGGGAGGGCTGAGCCCTTCCCGATCGCCTCCGCCTCTGCCCTCCGGTCCGGTGCGACGCTTGTGACGGGCCATGCGCCT TGATCGCGCGCCGCTGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 851; Mature: 850
Protein sequence:
>851_residues MAAFVAAAPRFPRSLRFALRELRGARRGFGVFLGCLVLGVMAIAGIGSFAGALTQGLEREGRAILGGDAAFTLVQREASA DERAVLESAGTLGTTALLRVMARTAGGDAALAEVKAVDGRYPLVGQVALSPPAPIAEVLGEKGGFYGAAADPVLLGRLGL KVGDRLLLGDAMVEVRAVLDSEPDKLSSGIGFGARLLVSQAVLPQTRLIQPGSLVRWSYRVALADPAPAALTAFMDATRE RFGAAGFDMRTRDGATPQLARNVRRISQFLALVALTALMVGGVGVANAVSSHLAAKREVIATLKAVGATRRDIFLIYAAE IGLIAALGIGIGLVLGAALPFAASAAIGALVPFPLEPRIDPAALALAALYGVLVSALFSLLPLARAQQARVSALFRDAIG EPAAKVGVGTFLAVAGVGAALVVLAMATSEDRRAAAVFLGAAALVFLLLRGVAAGLMALARRAPRPKDAMVRLALANVYR PGALTPSVVLSLGLGLSLMVGIALIDASLSRELAGPLRQAAPSFFFVDVPSGEEAEFRAFLAATAPGAEVKAVPMLRGRI TRVKDTPAEEVKPRADAAWVLQSDRGISSAAEVPEGSRVVAGQWWTGDETEPLVSFDAELAKGLGLALGDSVTVNVLGRS ITARIANLREVKWERLGINFVMVFSPATFAGAPHTVLATLTFPDGGDTAREVALLKAVAGRFPAITTVRVKETLEEAQRM LDNLSLGIRAASLVTLITSVLVLAGALAAGREGRIYDAVILKTLGATRGRLMFAYGLEYAGLGLATALVAVAAGSLAAFA VVTQVMDIGFSFSLPAAMGAVIGALVVTVGVGLAGTLRALSVPPARVLRHL
Sequences:
>Translated_851_residues MAAFVAAAPRFPRSLRFALRELRGARRGFGVFLGCLVLGVMAIAGIGSFAGALTQGLEREGRAILGGDAAFTLVQREASA DERAVLESAGTLGTTALLRVMARTAGGDAALAEVKAVDGRYPLVGQVALSPPAPIAEVLGEKGGFYGAAADPVLLGRLGL KVGDRLLLGDAMVEVRAVLDSEPDKLSSGIGFGARLLVSQAVLPQTRLIQPGSLVRWSYRVALADPAPAALTAFMDATRE RFGAAGFDMRTRDGATPQLARNVRRISQFLALVALTALMVGGVGVANAVSSHLAAKREVIATLKAVGATRRDIFLIYAAE IGLIAALGIGIGLVLGAALPFAASAAIGALVPFPLEPRIDPAALALAALYGVLVSALFSLLPLARAQQARVSALFRDAIG EPAAKVGVGTFLAVAGVGAALVVLAMATSEDRRAAAVFLGAAALVFLLLRGVAAGLMALARRAPRPKDAMVRLALANVYR PGALTPSVVLSLGLGLSLMVGIALIDASLSRELAGPLRQAAPSFFFVDVPSGEEAEFRAFLAATAPGAEVKAVPMLRGRI TRVKDTPAEEVKPRADAAWVLQSDRGISSAAEVPEGSRVVAGQWWTGDETEPLVSFDAELAKGLGLALGDSVTVNVLGRS ITARIANLREVKWERLGINFVMVFSPATFAGAPHTVLATLTFPDGGDTAREVALLKAVAGRFPAITTVRVKETLEEAQRM LDNLSLGIRAASLVTLITSVLVLAGALAAGREGRIYDAVILKTLGATRGRLMFAYGLEYAGLGLATALVAVAAGSLAAFA VVTQVMDIGFSFSLPAAMGAVIGALVVTVGVGLAGTLRALSVPPARVLRHL >Mature_850_residues AAFVAAAPRFPRSLRFALRELRGARRGFGVFLGCLVLGVMAIAGIGSFAGALTQGLEREGRAILGGDAAFTLVQREASAD ERAVLESAGTLGTTALLRVMARTAGGDAALAEVKAVDGRYPLVGQVALSPPAPIAEVLGEKGGFYGAAADPVLLGRLGLK VGDRLLLGDAMVEVRAVLDSEPDKLSSGIGFGARLLVSQAVLPQTRLIQPGSLVRWSYRVALADPAPAALTAFMDATRER FGAAGFDMRTRDGATPQLARNVRRISQFLALVALTALMVGGVGVANAVSSHLAAKREVIATLKAVGATRRDIFLIYAAEI GLIAALGIGIGLVLGAALPFAASAAIGALVPFPLEPRIDPAALALAALYGVLVSALFSLLPLARAQQARVSALFRDAIGE PAAKVGVGTFLAVAGVGAALVVLAMATSEDRRAAAVFLGAAALVFLLLRGVAAGLMALARRAPRPKDAMVRLALANVYRP GALTPSVVLSLGLGLSLMVGIALIDASLSRELAGPLRQAAPSFFFVDVPSGEEAEFRAFLAATAPGAEVKAVPMLRGRIT RVKDTPAEEVKPRADAAWVLQSDRGISSAAEVPEGSRVVAGQWWTGDETEPLVSFDAELAKGLGLALGDSVTVNVLGRSI TARIANLREVKWERLGINFVMVFSPATFAGAPHTVLATLTFPDGGDTAREVALLKAVAGRFPAITTVRVKETLEEAQRML DNLSLGIRAASLVTLITSVLVLAGALAAGREGRIYDAVILKTLGATRGRLMFAYGLEYAGLGLATALVAVAAGSLAAFAV VTQVMDIGFSFSLPAAMGAVIGALVVTVGVGLAGTLRALSVPPARVLRHL
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=809, Percent_Identity=26.2051915945612, Blast_Score=171, Evalue=2e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 87648; Mature: 87517
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFVAAAPRFPRSLRFALRELRGARRGFGVFLGCLVLGVMAIAGIGSFAGALTQGLERE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRAILGGDAAFTLVQREASADERAVLESAGTLGTTALLRVMARTAGGDAALAEVKAVDGR CCEEECCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCC YPLVGQVALSPPAPIAEVLGEKGGFYGAAADPVLLGRLGLKVGDRLLLGDAMVEVRAVLD CCCEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC SEPDKLSSGIGFGARLLVSQAVLPQTRLIQPGSLVRWSYRVALADPAPAALTAFMDATRE CCCHHHHCCCCHHHHHHHHHHHCCHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH RFGAAGFDMRTRDGATPQLARNVRRISQFLALVALTALMVGGVGVANAVSSHLAAKREVI HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH ATLKAVGATRRDIFLIYAAEIGLIAALGIGIGLVLGAALPFAASAAIGALVPFPLEPRID HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PAALALAALYGVLVSALFSLLPLARAQQARVSALFRDAIGEPAAKVGVGTFLAVAGVGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LVVLAMATSEDRRAAAVFLGAAALVFLLLRGVAAGLMALARRAPRPKDAMVRLALANVYR HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC PGALTPSVVLSLGLGLSLMVGIALIDASLSRELAGPLRQAAPSFFFVDVPSGEEAEFRAF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHE LAATAPGAEVKAVPMLRGRITRVKDTPAEEVKPRADAAWVLQSDRGISSAAEVPEGSRVV EEECCCCCCEEEEHHHHCCHHCCCCCCHHHCCCCCCEEEEEECCCCCCHHHCCCCCCEEE AGQWWTGDETEPLVSFDAELAKGLGLALGDSVTVNVLGRSITARIANLREVKWERLGINF EECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEE VMVFSPATFAGAPHTVLATLTFPDGGDTAREVALLKAVAGRFPAITTVRVKETLEEAQRM EEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH LDNLSLGIRAASLVTLITSVLVLAGALAAGREGRIYDAVILKTLGATRGRLMFAYGLEYA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHH GLGLATALVAVAAGSLAAFAVVTQVMDIGFSFSLPAAMGAVIGALVVTVGVGLAGTLRAL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHC SVPPARVLRHL CCCHHHHHHCC >Mature Secondary Structure AAFVAAAPRFPRSLRFALRELRGARRGFGVFLGCLVLGVMAIAGIGSFAGALTQGLERE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRAILGGDAAFTLVQREASADERAVLESAGTLGTTALLRVMARTAGGDAALAEVKAVDGR CCEEECCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCC YPLVGQVALSPPAPIAEVLGEKGGFYGAAADPVLLGRLGLKVGDRLLLGDAMVEVRAVLD CCCEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC SEPDKLSSGIGFGARLLVSQAVLPQTRLIQPGSLVRWSYRVALADPAPAALTAFMDATRE CCCHHHHCCCCHHHHHHHHHHHCCHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH RFGAAGFDMRTRDGATPQLARNVRRISQFLALVALTALMVGGVGVANAVSSHLAAKREVI HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH ATLKAVGATRRDIFLIYAAEIGLIAALGIGIGLVLGAALPFAASAAIGALVPFPLEPRID HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PAALALAALYGVLVSALFSLLPLARAQQARVSALFRDAIGEPAAKVGVGTFLAVAGVGAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LVVLAMATSEDRRAAAVFLGAAALVFLLLRGVAAGLMALARRAPRPKDAMVRLALANVYR HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC PGALTPSVVLSLGLGLSLMVGIALIDASLSRELAGPLRQAAPSFFFVDVPSGEEAEFRAF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHE LAATAPGAEVKAVPMLRGRITRVKDTPAEEVKPRADAAWVLQSDRGISSAAEVPEGSRVV EEECCCCCCEEEEHHHHCCHHCCCCCCHHHCCCCCCEEEEEECCCCCCHHHCCCCCCEEE AGQWWTGDETEPLVSFDAELAKGLGLALGDSVTVNVLGRSITARIANLREVKWERLGINF EECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCEE VMVFSPATFAGAPHTVLATLTFPDGGDTAREVALLKAVAGRFPAITTVRVKETLEEAQRM EEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH LDNLSLGIRAASLVTLITSVLVLAGALAAGREGRIYDAVILKTLGATRGRLMFAYGLEYA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHH GLGLATALVAVAAGSLAAFAVVTQVMDIGFSFSLPAAMGAVIGALVVTVGVGLAGTLRAL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHC SVPPARVLRHL CCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]