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The map label for this gene is sigK [H]

Identifier: 154245661

GI number: 154245661

Start: 1933205

End: 1933774

Strand: Direct

Name: sigK [H]

Synonym: Xaut_1717

Alternate gene names: 154245661

Gene position: 1933205-1933774 (Clockwise)

Preceding gene: 154245658

Following gene: 154245662

Centisome position: 36.41

GC content: 70.53

Gene sequence:

>570_bases
ATGGCGGCGATGACATCGAGCGCCACGCGGATCGATCCGGATGCGCTGGCGCGTGCGCTGGAGGGCTGCGCGCGCGGCGA
CCATGCCTGCCTGCGGGAGATTTATGACAAGATCGCGCCGCAGATGACGGGCGTCGCGATCCGCCTGCTGCGCCGGCGTG
ATCTTGCCGAGGACGTGGTGCACGACACATTCGTGCGCATCTGGGAGAAGGCGGCGACGTTCGATCCCGCCCGCGGCAGC
GCCGTGACCTGGATGTTCGCGATCCTGCGCCACCGCGCGCTCAACGTGCTGCGCGCGGAGGGCCGCACCGACCTCACCGA
CGATTTCGAGCCCCTGGCCCTTGCCAGCGATGCGCCCGACGCCGAGGCGGTGGTGTGCGCCCTGTCGGAGGCGGGCGCGC
TGCGGCGCTGCCTGGAGCGGCTCGATCCGCCGCGCCGCGTCGCCATCGTGCTCGCCTATACGCGTGGCCTCAGCCATGGT
GAACTGGCGGGCCGCATGGGCATTCCCCTCGGCACCGCCAAATCGTGGATCCGCAGGAGCCTGCTTGCGCTCAGGGAGTG
CATGGCATGA

Upstream 100 bases:

>100_bases
ATGCAGCGGTATTGAGAATTATTTCGTCAGACGCATCCGCCGTTCCTCGAGCGCCGTAACGGAAGGCAGGTCCACAACAA
CGCGGAAGGCTGAGCAGGCG

Downstream 100 bases:

>100_bases
GCGAGGATCTCGACGCCCGCGCCGGCGAATATGTGCTCGGGCTGCTCGACCATTCGGAAGCCGAGGCCTGCGCGGCACGC
CTTGTGGCCGATCCCGCCTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MAAMTSSATRIDPDALARALEGCARGDHACLREIYDKIAPQMTGVAIRLLRRRDLAEDVVHDTFVRIWEKAATFDPARGS
AVTWMFAILRHRALNVLRAEGRTDLTDDFEPLALASDAPDAEAVVCALSEAGALRRCLERLDPPRRVAIVLAYTRGLSHG
ELAGRMGIPLGTAKSWIRRSLLALRECMA

Sequences:

>Translated_189_residues
MAAMTSSATRIDPDALARALEGCARGDHACLREIYDKIAPQMTGVAIRLLRRRDLAEDVVHDTFVRIWEKAATFDPARGS
AVTWMFAILRHRALNVLRAEGRTDLTDDFEPLALASDAPDAEAVVCALSEAGALRRCLERLDPPRRVAIVLAYTRGLSHG
ELAGRMGIPLGTAKSWIRRSLLALRECMA
>Mature_188_residues
AAMTSSATRIDPDALARALEGCARGDHACLREIYDKIAPQMTGVAIRLLRRRDLAEDVVHDTFVRIWEKAATFDPARGSA
VTWMFAILRHRALNVLRAEGRTDLTDDFEPLALASDAPDAEAVVCALSEAGALRRCLERLDPPRRVAIVLAYTRGLSHGE
LAGRMGIPLGTAKSWIRRSLLALRECMA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20749; Mature: 20618

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAMTSSATRIDPDALARALEGCARGDHACLREIYDKIAPQMTGVAIRLLRRRDLAEDVV
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
HDTFVRIWEKAATFDPARGSAVTWMFAILRHRALNVLRAEGRTDLTDDFEPLALASDAPD
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCC
AEAVVCALSEAGALRRCLERLDPPRRVAIVLAYTRGLSHGELAGRMGIPLGTAKSWIRRS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHH
LLALRECMA
HHHHHHHCC
>Mature Secondary Structure 
AAMTSSATRIDPDALARALEGCARGDHACLREIYDKIAPQMTGVAIRLLRRRDLAEDVV
CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
HDTFVRIWEKAATFDPARGSAVTWMFAILRHRALNVLRAEGRTDLTDDFEPLALASDAPD
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCC
AEAVVCALSEAGALRRCLERLDPPRRVAIVLAYTRGLSHGELAGRMGIPLGTAKSWIRRS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHH
LLALRECMA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]