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The map label for this gene is ydhC [H]

Identifier: 154245515

GI number: 154245515

Start: 1779534

End: 1780226

Strand: Reverse

Name: ydhC [H]

Synonym: Xaut_1569

Alternate gene names: 154245515

Gene position: 1780226-1779534 (Counterclockwise)

Preceding gene: 154245524

Following gene: 154245507

Centisome position: 33.53

GC content: 65.95

Gene sequence:

>693_bases
ATGAGAACGGAAAAATCCCCGGACGGGCCAGACAAGGACCAGGGCGTCCGCAGTCACGCCATCGCCACGGACCTGCGGGC
CGGCATCCTCGCCGGGCTCTACGCCCCCGGCACCCGCGTGCGGCAGGAGGAGCTGGCCGAGCGCTACGGCACCAGCCGCA
TCCCGGTGCGCGAGGCCCTGCGGGACCTCGAAAGCGAGGGACTGGTGGTGCTGGTGCCCAATTCCGGCGCGTGGATCGCC
AAGACCGACATCAACGAGTGCGTGGAAATCTACAAGATCCGCGAGCGCATCGAGCCCCTCGCCCTCAGCGAGAGCATCCG
CAACATGGACGCGGCCACCATCACCCGTCTCGCCGAGCTGTGCGCGCAGATCGAGGCCTCGACGGAAGTGGAGGATTTCC
TGAAGCTGGACCGGGAGTTCCACCTGCTCAGCTACAAGGCGGCGGCGATGCCGACGCTGCTTTCCATGATCGAGCGCTTC
TGGAACACCACCCAGCATTATCGCCGCGCCTATTCCCACCTCATCGGGAAGGAGGGCCAGTGGATCATCCACAGCGAGCA
TCGCCTGATCATGGAAGCGATCCGGCGCCGCGACGACAGGGACGTGCAGCATTTGCTTGAAAGCCACATCCGCCGCACCC
GGCTTCAGCTTCAGGCGAACGACCTCACCGGCCTCGTGCCGGCCGGCAGATAG

Upstream 100 bases:

>100_bases
TATTTGGATACATTTGTCAGAATGCGCACGCGTATGGTATCCAAACAGACCGAGCGGCACGGTCCCCCTGCACGCCAGGG
CCCCTCCAGCAGAGCGCGCC

Downstream 100 bases:

>100_bases
GCCTGCCTAGACCTTCTCCGCGCGGCGACGTCCGCCGGCGGGCTTGCGCGGCGGCTCGGCCGGCGCCGCTGGGGTGGAGA
TGGACCACAAGGTCTCGAAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRTEKSPDGPDKDQGVRSHAIATDLRAGILAGLYAPGTRVRQEELAERYGTSRIPVREALRDLESEGLVVLVPNSGAWIA
KTDINECVEIYKIRERIEPLALSESIRNMDAATITRLAELCAQIEASTEVEDFLKLDREFHLLSYKAAAMPTLLSMIERF
WNTTQHYRRAYSHLIGKEGQWIIHSEHRLIMEAIRRRDDRDVQHLLESHIRRTRLQLQANDLTGLVPAGR

Sequences:

>Translated_230_residues
MRTEKSPDGPDKDQGVRSHAIATDLRAGILAGLYAPGTRVRQEELAERYGTSRIPVREALRDLESEGLVVLVPNSGAWIA
KTDINECVEIYKIRERIEPLALSESIRNMDAATITRLAELCAQIEASTEVEDFLKLDREFHLLSYKAAAMPTLLSMIERF
WNTTQHYRRAYSHLIGKEGQWIIHSEHRLIMEAIRRRDDRDVQHLLESHIRRTRLQLQANDLTGLVPAGR
>Mature_230_residues
MRTEKSPDGPDKDQGVRSHAIATDLRAGILAGLYAPGTRVRQEELAERYGTSRIPVREALRDLESEGLVVLVPNSGAWIA
KTDINECVEIYKIRERIEPLALSESIRNMDAATITRLAELCAQIEASTEVEDFLKLDREFHLLSYKAAAMPTLLSMIERF
WNTTQHYRRAYSHLIGKEGQWIIHSEHRLIMEAIRRRDDRDVQHLLESHIRRTRLQLQANDLTGLVPAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=192, Percent_Identity=28.125, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26289; Mature: 26289

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTEKSPDGPDKDQGVRSHAIATDLRAGILAGLYAPGTRVRQEELAERYGTSRIPVREAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH
RDLESEGLVVLVPNSGAWIAKTDINECVEIYKIRERIEPLALSESIRNMDAATITRLAEL
HHHCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
CAQIEASTEVEDFLKLDREFHLLSYKAAAMPTLLSMIERFWNTTQHYRRAYSHLIGKEGQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WIIHSEHRLIMEAIRRRDDRDVQHLLESHIRRTRLQLQANDLTGLVPAGR
EEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRTEKSPDGPDKDQGVRSHAIATDLRAGILAGLYAPGTRVRQEELAERYGTSRIPVREAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH
RDLESEGLVVLVPNSGAWIAKTDINECVEIYKIRERIEPLALSESIRNMDAATITRLAEL
HHHCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
CAQIEASTEVEDFLKLDREFHLLSYKAAAMPTLLSMIERFWNTTQHYRRAYSHLIGKEGQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WIIHSEHRLIMEAIRRRDDRDVQHLLESHIRRTRLQLQANDLTGLVPAGR
EEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]