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The map label for this gene is stc [H]

Identifier: 154245285

GI number: 154245285

Start: 1534666

End: 1536705

Strand: Direct

Name: stc [H]

Synonym: Xaut_1337

Alternate gene names: 154245285

Gene position: 1534666-1536705 (Clockwise)

Preceding gene: 154245283

Following gene: 154245286

Centisome position: 28.91

GC content: 70.83

Gene sequence:

>2040_bases
ATGCCTTTCGGACGGACCGGACAAAAGTTCTCGGTGCCTGAGAACGACGACAAAGTAATGACGTCGTGGGAGCAATTCCT
CGGCGGTGACGAGTTCGGCTCCGACGCGCTGCGCCGGCTCGTCGATGATTCCTGGCGTCGCTGCCTCAACAACAGCGTGG
ACCCGCAACGCGACCAGGCCCCGCCGCCCATGCGCGAGGACTCGCTGCATTCCCTGCGCGACGACTGCCGTGAGCTGCTG
GAGGCGAGCCAGCCGGTGATGGCCTCGGCGCGGGAGTTCCTCGCTGAGACCGGCACCGTGATGGTTCTCACCGACGGCGC
CGGCGTCATCCTCAACCTGGAGGGGGACATGCGGCTGCGGGACGCGGCGGCCAACATCCACCTGCTGTCGGGCGCCAGCT
GGAGCGAGCAGGCGTGCGGCACCAATGCCATCGGCACGGCCATCGAGGTCGGCCAGCCGGTGCAGATCCATTCGGCCGAG
CATTATTGCTCGGGCATCAAGCGCTGGTCGTGCTCCGCCAACGTCATCCGCGACCCTTATGACGGCACCATTCTCGGCGT
GGTCGATGTCTCCGGGCTTTCGGACACCTTCAATCGCCACAGCCTCGCCCTCGTGGTGGCGACGGCCGGGCGCATCGAGA
ATCGCCTCGCCCAGCAGGAGATGGACCTCCGCCTGCGCCTCCTCGACCACTGCATGGACCGCCTTTCGGGGGCGAGCAGC
GACGGTGTGGTCGTGTTCGACCGCCGCGGCCGGGCGGTGAAGGCCAACGGTGCCGCCGCCGACGCGCTGCTCGACCTGCA
GCGCCAGCGCGGCGAGGCGACGGGCGCCGACCTCTCGCAGCTTCGCCTGAACTGGCGCAAGCAGGCCGCCCTGCCCGACG
AACTGCCGCCGTGGATGCGGCGCGAATGGCTTGAGCCGGTGGTGACCGATGGCGAGCGGCTCGGCATCGTGCTGCGCCTT
CCCGGGCGCCGGGCTGCGCCGTCCCGGACCGCGGGCCCGGACGCCGCCCCGAAGCCGGAGGCGGGGGGCGATGCCTTCGC
GCGGATCGTCGGCGAGGCGCCCAGCCTGCGGCACGCCATCGGCCGGGCGCGTCAGCTTGCGAAGAGCCGGGCGCCGGTGC
TGCTGCTGGGCGAGACCGGCGTGGGCAAGGACGTGTTCGCCCAGTGCCTCCATGCCGGCAGCGCCGGGCGCGACGGCGCA
TTCGTGGCGCTCAATTGCGGTGGCTTCTCCCGCGAGCTGCTGACGAGCGAGCTGTTCGGCTATGCGGAAGGCGCCTTCAC
CGGGGCGCGCCGCGGCGGCATGACCGGCAAGATCGAGGCTGCGGACGGCGGCACCCTGTTCCTCGACGAGATCGGCGAGA
TGCCGAAGGACTTGCAGCCCCATTTCCTGCGGGTGCTGGAATCGGGAGAGGTCTACCGCATCGGCGAAACGCGTCCGCGC
AAGGTGAACCTGCGCCTCGTGGCCGCCACCAACCGCGACCTGCGGCGCGAGGTGGAGGCGGGGCGGTTCCGCATGGATTT
GTTCTATCGCGTCGCGGTCACCAGCATCTCCATTCCCGCCCTGCGGGAGCGCGCCACGGACATCCCGCTCCTGGCCGAGC
ATCTGGTGCAGGACCTCGCACGCCGGCAGGGCCTGGCACCCCGCCGGCTCTCGCCCCGGGCCATCGAGGTGCTGCAGGCC
TATGCCTGGCCGGGCAACGTGCGCGAGCTGCGCAACGTCATCGAGGGCATGCTCCTCATCGCCGAGGGGGAGGAACTGAC
CGAAGCCGATATCCCGGACGAGATCTGGGCGGCGCCGGCGAGCGGCGTGGCGTCCCCGCTCGCGCAGGCCGGCGAAGCTG
GCGAGGCCGAGCCCTTGCGCGGCCTCACCGGCATGGAGAATGCCGAGCGGCTCGCCCTGTTGCGGGCCGTGCAGGCGCAC
AAGGGCAACATGACCGCGGTGGCCCGCGATCTGGGGATCGCCAAGAGCACGGTCTACGCCAAGCTCCGCCGCTTCGGCCT
CGAGGGCGCGGTGGGCGAGACGCGGCGGGTCCAGATCTAG

Upstream 100 bases:

>100_bases
AGACCGAAGAGAAAAGTCCGCCCACGAAAACGCAGACAGCAGATCTGCCCGGGTGGCGGCACACCGGCCGGCTCACCGAG
CCCGCCGGGGGAGGACAAAA

Downstream 100 bases:

>100_bases
GCCCCGGTCCACAACTTGCACCTGACCGGCACGCCGATTGCTTGAAAGCATCGGCTTTCGCATCCCTCCCGAAAGCTTCC
TCCACACCGCCGGTCTCGAT

Product: Fis family GAF modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 678

Protein sequence:

>679_residues
MPFGRTGQKFSVPENDDKVMTSWEQFLGGDEFGSDALRRLVDDSWRRCLNNSVDPQRDQAPPPMREDSLHSLRDDCRELL
EASQPVMASAREFLAETGTVMVLTDGAGVILNLEGDMRLRDAAANIHLLSGASWSEQACGTNAIGTAIEVGQPVQIHSAE
HYCSGIKRWSCSANVIRDPYDGTILGVVDVSGLSDTFNRHSLALVVATAGRIENRLAQQEMDLRLRLLDHCMDRLSGASS
DGVVVFDRRGRAVKANGAAADALLDLQRQRGEATGADLSQLRLNWRKQAALPDELPPWMRREWLEPVVTDGERLGIVLRL
PGRRAAPSRTAGPDAAPKPEAGGDAFARIVGEAPSLRHAIGRARQLAKSRAPVLLLGETGVGKDVFAQCLHAGSAGRDGA
FVALNCGGFSRELLTSELFGYAEGAFTGARRGGMTGKIEAADGGTLFLDEIGEMPKDLQPHFLRVLESGEVYRIGETRPR
KVNLRLVAATNRDLRREVEAGRFRMDLFYRVAVTSISIPALRERATDIPLLAEHLVQDLARRQGLAPRRLSPRAIEVLQA
YAWPGNVRELRNVIEGMLLIAEGEELTEADIPDEIWAAPASGVASPLAQAGEAGEAEPLRGLTGMENAERLALLRAVQAH
KGNMTAVARDLGIAKSTVYAKLRRFGLEGAVGETRRVQI

Sequences:

>Translated_679_residues
MPFGRTGQKFSVPENDDKVMTSWEQFLGGDEFGSDALRRLVDDSWRRCLNNSVDPQRDQAPPPMREDSLHSLRDDCRELL
EASQPVMASAREFLAETGTVMVLTDGAGVILNLEGDMRLRDAAANIHLLSGASWSEQACGTNAIGTAIEVGQPVQIHSAE
HYCSGIKRWSCSANVIRDPYDGTILGVVDVSGLSDTFNRHSLALVVATAGRIENRLAQQEMDLRLRLLDHCMDRLSGASS
DGVVVFDRRGRAVKANGAAADALLDLQRQRGEATGADLSQLRLNWRKQAALPDELPPWMRREWLEPVVTDGERLGIVLRL
PGRRAAPSRTAGPDAAPKPEAGGDAFARIVGEAPSLRHAIGRARQLAKSRAPVLLLGETGVGKDVFAQCLHAGSAGRDGA
FVALNCGGFSRELLTSELFGYAEGAFTGARRGGMTGKIEAADGGTLFLDEIGEMPKDLQPHFLRVLESGEVYRIGETRPR
KVNLRLVAATNRDLRREVEAGRFRMDLFYRVAVTSISIPALRERATDIPLLAEHLVQDLARRQGLAPRRLSPRAIEVLQA
YAWPGNVRELRNVIEGMLLIAEGEELTEADIPDEIWAAPASGVASPLAQAGEAGEAEPLRGLTGMENAERLALLRAVQAH
KGNMTAVARDLGIAKSTVYAKLRRFGLEGAVGETRRVQI
>Mature_678_residues
PFGRTGQKFSVPENDDKVMTSWEQFLGGDEFGSDALRRLVDDSWRRCLNNSVDPQRDQAPPPMREDSLHSLRDDCRELLE
ASQPVMASAREFLAETGTVMVLTDGAGVILNLEGDMRLRDAAANIHLLSGASWSEQACGTNAIGTAIEVGQPVQIHSAEH
YCSGIKRWSCSANVIRDPYDGTILGVVDVSGLSDTFNRHSLALVVATAGRIENRLAQQEMDLRLRLLDHCMDRLSGASSD
GVVVFDRRGRAVKANGAAADALLDLQRQRGEATGADLSQLRLNWRKQAALPDELPPWMRREWLEPVVTDGERLGIVLRLP
GRRAAPSRTAGPDAAPKPEAGGDAFARIVGEAPSLRHAIGRARQLAKSRAPVLLLGETGVGKDVFAQCLHAGSAGRDGAF
VALNCGGFSRELLTSELFGYAEGAFTGARRGGMTGKIEAADGGTLFLDEIGEMPKDLQPHFLRVLESGEVYRIGETRPRK
VNLRLVAATNRDLRREVEAGRFRMDLFYRVAVTSISIPALRERATDIPLLAEHLVQDLARRQGLAPRRLSPRAIEVLQAY
AWPGNVRELRNVIEGMLLIAEGEELTEADIPDEIWAAPASGVASPLAQAGEAGEAEPLRGLTGMENAERLALLRAVQAHK
GNMTAVARDLGIAKSTVYAKLRRFGLEGAVGETRRVQI

Specific function: Member Of The Two-Component Regulatory System Zras/Zrar. When Activated By Zras It Acts In Conjunction With Sigma-54 To Regulate The Expression Of Zrap. Positively Autoregulates The Expression Of The Zrasr Operon. [C]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=329, Percent_Identity=41.0334346504559, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1789233, Length=321, Percent_Identity=38.006230529595, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1790299, Length=334, Percent_Identity=40.1197604790419, Blast_Score=225, Evalue=7e-60,
Organism=Escherichia coli, GI1788905, Length=322, Percent_Identity=40.0621118012422, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1788550, Length=330, Percent_Identity=38.1818181818182, Blast_Score=216, Evalue=5e-57,
Organism=Escherichia coli, GI87082117, Length=320, Percent_Identity=39.6875, Blast_Score=216, Evalue=5e-57,
Organism=Escherichia coli, GI1789087, Length=329, Percent_Identity=35.8662613981763, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1786524, Length=333, Percent_Identity=39.3393393393393, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI87082152, Length=320, Percent_Identity=39.375, Blast_Score=202, Evalue=6e-53,
Organism=Escherichia coli, GI87081872, Length=229, Percent_Identity=45.8515283842795, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1787583, Length=331, Percent_Identity=35.6495468277946, Blast_Score=185, Evalue=1e-47,
Organism=Escherichia coli, GI87081858, Length=655, Percent_Identity=25.0381679389313, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1789828, Length=257, Percent_Identity=36.1867704280156, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 73745; Mature: 73614

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFGRTGQKFSVPENDDKVMTSWEQFLGGDEFGSDALRRLVDDSWRRCLNNSVDPQRDQA
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPPMREDSLHSLRDDCRELLEASQPVMASAREFLAETGTVMVLTDGAGVILNLEGDMRLR
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCEEE
DAAANIHLLSGASWSEQACGTNAIGTAIEVGQPVQIHSAEHYCSGIKRWSCSANVIRDPY
HHHCCEEEEECCCCCHHCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHCCCCCCCCCCCC
DGTILGVVDVSGLSDTFNRHSLALVVATAGRIENRLAQQEMDLRLRLLDHCMDRLSGASS
CCEEEEEEEECCCHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGVVVFDRRGRAVKANGAAADALLDLQRQRGEATGADLSQLRLNWRKQAALPDELPPWMR
CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
REWLEPVVTDGERLGIVLRLPGRRAAPSRTAGPDAAPKPEAGGDAFARIVGEAPSLRHAI
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
GRARQLAKSRAPVLLLGETGVGKDVFAQCLHAGSAGRDGAFVALNCGGFSRELLTSELFG
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
YAEGAFTGARRGGMTGKIEAADGGTLFLDEIGEMPKDLQPHFLRVLESGEVYRIGETRPR
HHCCCCCCHHCCCCCCEEEECCCCEEEHHHHCCCCCCCCHHHHHHHCCCCEEEECCCCCC
KVNLRLVAATNRDLRREVEAGRFRMDLFYRVAVTSISIPALRERATDIPLLAEHLVQDLA
EEEEEEEEECCHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
RRQGLAPRRLSPRAIEVLQAYAWPGNVRELRNVIEGMLLIAEGEELTEADIPDEIWAAPA
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEEECCCHHCCCCCCHHHHCCCC
SGVASPLAQAGEAGEAEPLRGLTGMENAERLALLRAVQAHKGNMTAVARDLGIAKSTVYA
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KLRRFGLEGAVGETRRVQI
HHHHHCCCCCCCCCCEECC
>Mature Secondary Structure 
PFGRTGQKFSVPENDDKVMTSWEQFLGGDEFGSDALRRLVDDSWRRCLNNSVDPQRDQA
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPPMREDSLHSLRDDCRELLEASQPVMASAREFLAETGTVMVLTDGAGVILNLEGDMRLR
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCEEE
DAAANIHLLSGASWSEQACGTNAIGTAIEVGQPVQIHSAEHYCSGIKRWSCSANVIRDPY
HHHCCEEEEECCCCCHHCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHCCCCCCCCCCCC
DGTILGVVDVSGLSDTFNRHSLALVVATAGRIENRLAQQEMDLRLRLLDHCMDRLSGASS
CCEEEEEEEECCCHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGVVVFDRRGRAVKANGAAADALLDLQRQRGEATGADLSQLRLNWRKQAALPDELPPWMR
CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH
REWLEPVVTDGERLGIVLRLPGRRAAPSRTAGPDAAPKPEAGGDAFARIVGEAPSLRHAI
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
GRARQLAKSRAPVLLLGETGVGKDVFAQCLHAGSAGRDGAFVALNCGGFSRELLTSELFG
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
YAEGAFTGARRGGMTGKIEAADGGTLFLDEIGEMPKDLQPHFLRVLESGEVYRIGETRPR
HHCCCCCCHHCCCCCCEEEECCCCEEEHHHHCCCCCCCCHHHHHHHCCCCEEEECCCCCC
KVNLRLVAATNRDLRREVEAGRFRMDLFYRVAVTSISIPALRERATDIPLLAEHLVQDLA
EEEEEEEEECCHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
RRQGLAPRRLSPRAIEVLQAYAWPGNVRELRNVIEGMLLIAEGEELTEADIPDEIWAAPA
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEEECCCHHCCCCCCHHHHCCCC
SGVASPLAQAGEAGEAEPLRGLTGMENAERLALLRAVQAHKGNMTAVARDLGIAKSTVYA
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KLRRFGLEGAVGETRRVQI
HHHHHCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA