BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is ydfG [C]

Identifier: 154245242

GI number: 154245242

Start: 1491318

End: 1492118

Strand: Direct

Name: ydfG [C]

Synonym: Xaut_1294

Alternate gene names: 154245242

Gene position: 1491318-1492118 (Clockwise)

Preceding gene: 154245238

Following gene: 154245243

Centisome position: 28.09

GC content: 70.41

Gene sequence:

>801_bases
ATGAGCACCAAGGGAACTGCCGTCATCACCGGCGCCTCGTCCGGCATCGGCGCCGTCTATGCGGAGCGGCTCGCCGCGCG
CGGTCACGACGTGATCCTCGTCGCCCGCAACGCCGAGCGGCTGGCGCAGCAGGCCGAGCGGATCGGGCAGCGCCATGGCG
TCTCCGTCCGCGTCTTCAACGCCGACCTCACCGATGCCGCCCAGCTGCGCCAGGTGGAGGCGCTGCTGCGGGACGACGAC
GCCATCACCGTCCTCGTCAACAATGCCGGCTTCGGCGGGGCCGGGACGCTGCTCCAGTCCGATGTGGACCGCATGGAGGA
GATGGTGGCCATCAACGTCACCGCCGTCATGCGCCTCACCTATGCGGTGGCGCCGCGCTTCGTGGCGCGCGGGGCCGGTA
CCCTCATCAACATTTCGTCCATCGTCGCCATCGGGCCGGAAATCCTGAATGGGGTCTATGGGGGCACCAAGGCCTTCGTG
CTCGGCTTCAGCCAGTCGCTGCGCAAGGAACTCGCCGGAACCGGCGTCGGCGTGCAGGTGGTGCTGCCGGGGGCTACCGC
CACCGCCTTCTGGGATGCCGCCGGCCTGCCCGTCGACCAGCTGCCGCAGACCTGGGTGATGTCGGCGGCGGATCTGGTGG
ACGCGGCGCTGGCCGGCCTCGACAAGGGCGAGTTCGTCACCATCCCCTCGCTTCAGGATGGGGCGCAGTGGGAGGCCTAT
GAGGCGGCCCGCCAGGCCATGCTGCCCCACCTCTCCAGCGCCAAGGTCGCCCCGCGCTATACTGCGACGGCGGCGGCCTG
A

Upstream 100 bases:

>100_bases
GTCCTAAATCGTGGTGTCTTTGACATTTGAGACATTGGCCGCCAGACCTATGGTTCTCCCATCAGAGCCGGCCCGGGGGC
CGGATAGAGGGGACAAGCCC

Downstream 100 bases:

>100_bases
TCCCTGATCTGCCGCCGGATGGGCCGGCGGCAGCTTTCTCCCCAACACCGATGAGGTCGAGATGCCGGGTATCGGTTTCG
TGGTGTTCGACGGCTTCCAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSTKGTAVITGASSGIGAVYAERLAARGHDVILVARNAERLAQQAERIGQRHGVSVRVFNADLTDAAQLRQVEALLRDDD
AITVLVNNAGFGGAGTLLQSDVDRMEEMVAINVTAVMRLTYAVAPRFVARGAGTLINISSIVAIGPEILNGVYGGTKAFV
LGFSQSLRKELAGTGVGVQVVLPGATATAFWDAAGLPVDQLPQTWVMSAADLVDAALAGLDKGEFVTIPSLQDGAQWEAY
EAARQAMLPHLSSAKVAPRYTATAAA

Sequences:

>Translated_266_residues
MSTKGTAVITGASSGIGAVYAERLAARGHDVILVARNAERLAQQAERIGQRHGVSVRVFNADLTDAAQLRQVEALLRDDD
AITVLVNNAGFGGAGTLLQSDVDRMEEMVAINVTAVMRLTYAVAPRFVARGAGTLINISSIVAIGPEILNGVYGGTKAFV
LGFSQSLRKELAGTGVGVQVVLPGATATAFWDAAGLPVDQLPQTWVMSAADLVDAALAGLDKGEFVTIPSLQDGAQWEAY
EAARQAMLPHLSSAKVAPRYTATAAA
>Mature_265_residues
STKGTAVITGASSGIGAVYAERLAARGHDVILVARNAERLAQQAERIGQRHGVSVRVFNADLTDAAQLRQVEALLRDDDA
ITVLVNNAGFGGAGTLLQSDVDRMEEMVAINVTAVMRLTYAVAPRFVARGAGTLINISSIVAIGPEILNGVYGGTKAFVL
GFSQSLRKELAGTGVGVQVVLPGATATAFWDAAGLPVDQLPQTWVMSAADLVDAALAGLDKGEFVTIPSLQDGAQWEAYE
AARQAMLPHLSSAKVAPRYTATAAA

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4557649, Length=187, Percent_Identity=35.8288770053476, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI7705855, Length=212, Percent_Identity=34.4339622641509, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI226371731, Length=186, Percent_Identity=31.7204301075269, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI7706318, Length=181, Percent_Identity=30.3867403314917, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI20149619, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI15277342, Length=220, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI32483357, Length=186, Percent_Identity=29.5698924731183, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI40254992, Length=181, Percent_Identity=28.1767955801105, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI5031737, Length=186, Percent_Identity=30.1075268817204, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=30.1075268817204, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=34.6368715083799, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787335, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=31.7948717948718, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082160, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=27.807486631016, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=183, Percent_Identity=29.5081967213115, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788459, Length=184, Percent_Identity=29.3478260869565, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=35.2112676056338, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI25152911, Length=196, Percent_Identity=33.6734693877551, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17559552, Length=189, Percent_Identity=30.6878306878307, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17557668, Length=189, Percent_Identity=30.6878306878307, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=33.8461538461538, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212646214, Length=189, Percent_Identity=29.1005291005291, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=32.6424870466321, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=33.5, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=224, Percent_Identity=30.3571428571429, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17560176, Length=189, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=236, Percent_Identity=30.9322033898305, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=32.6829268292683, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=31.1557788944724, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=209, Percent_Identity=32.0574162679426, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=205, Percent_Identity=33.1707317073171, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=191, Percent_Identity=29.8429319371728, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=209, Percent_Identity=30.1435406698565, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=28.2828282828283, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=33.0049261083744, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=199, Percent_Identity=32.1608040201005, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=201, Percent_Identity=30.8457711442786, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=206, Percent_Identity=30.0970873786408, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=196, Percent_Identity=27.5510204081633, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=27.8350515463918, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=35.7512953367876, Blast_Score=94, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6319635, Length=190, Percent_Identity=28.4210526315789, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6322067, Length=197, Percent_Identity=26.3959390862944, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320089, Length=227, Percent_Identity=26.431718061674, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24640442, Length=212, Percent_Identity=34.9056603773585, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=32.258064516129, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=32.258064516129, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=34.375, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI28574402, Length=185, Percent_Identity=30.8108108108108, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24584744, Length=185, Percent_Identity=30.8108108108108, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI116007236, Length=209, Percent_Identity=32.0574162679426, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=29.8913043478261, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=34.7150259067358, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639444, Length=180, Percent_Identity=31.1111111111111, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=31.25, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI116007238, Length=195, Percent_Identity=30.2564102564103, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=31.3131313131313, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648944, Length=225, Percent_Identity=31.1111111111111, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27672; Mature: 27541

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKGTAVITGASSGIGAVYAERLAARGHDVILVARNAERLAQQAERIGQRHGVSVRVFN
CCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEE
ADLTDAAQLRQVEALLRDDDAITVLVNNAGFGGAGTLLQSDVDRMEEMVAINVTAVMRLT
CCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAVAPRFVARGAGTLINISSIVAIGPEILNGVYGGTKAFVLGFSQSLRKELAGTGVGVQV
HHHHHHHHHCCCCCEEEHHHHHHCCHHHHHHHCCCHHHHEEHHHHHHHHHHCCCCCCEEE
VLPGATATAFWDAAGLPVDQLPQTWVMSAADLVDAALAGLDKGEFVTIPSLQDGAQWEAY
EECCCCHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHH
EAARQAMLPHLSSAKVAPRYTATAAA
HHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STKGTAVITGASSGIGAVYAERLAARGHDVILVARNAERLAQQAERIGQRHGVSVRVFN
CCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEE
ADLTDAAQLRQVEALLRDDDAITVLVNNAGFGGAGTLLQSDVDRMEEMVAINVTAVMRLT
CCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAVAPRFVARGAGTLINISSIVAIGPEILNGVYGGTKAFVLGFSQSLRKELAGTGVGVQV
HHHHHHHHHCCCCCEEEHHHHHHCCHHHHHHHCCCHHHHEEHHHHHHHHHHCCCCCCEEE
VLPGATATAFWDAAGLPVDQLPQTWVMSAADLVDAALAGLDKGEFVTIPSLQDGAQWEAY
EECCCCHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHH
EAARQAMLPHLSSAKVAPRYTATAAA
HHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]