BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is yqjQ [H]

Identifier: 154245232

GI number: 154245232

Start: 1476956

End: 1477765

Strand: Reverse

Name: yqjQ [H]

Synonym: Xaut_1284

Alternate gene names: 154245232

Gene position: 1477765-1476956 (Counterclockwise)

Preceding gene: 154245233

Following gene: 154245231

Centisome position: 27.84

GC content: 73.83

Gene sequence:

>810_bases
ATGCGGCGTGACGCGCAGCACGGCCCGCGCCGCGTCCTCATCACCGGGGCCGGGTCCGGCATCGGCCGCGCCCTCGCTCT
GGAGGCGGCCGCGCGCGGCATGGAGGTCGCCCTGTGCGGCCGGCGTCGCGGCGCGCTGGAAGACACCGCCGCCGCCCTGC
CGCCGGGCGCCCGTCCGCTGGTCATCTCCGCCGACATCACCTCGACGGCGGATCGCGCCCGGATCGTGGCGCGGATAAAG
GCCGAGTGGGGCGCCCTCCACGTGCTGGTCAACAATGCCGGCGTGGTGGAGGGCGGCCCGCTGGAGACCTTCGACGACGC
GGCGCTGGAAGACACCTTCCGCACCAACGTGCTCGCCCCCATGGCGCTGACGCGGGATCTGGCGCCGCTGCTTGCGGCTG
CACGCCCGTCGCGGGTGGTGAACGTGGGCTCGGTGTTCGGCGACATCGCCTATCCCGGCTTTGCTGCCTATTCGGCCTCG
AAGTTCGCCTTGCGCGGCTTTTCCAGCGCCCTGCGCCGGGAGTGGCGCCCGCTGGGCATCGGTGTCACCTATGTGGCGCC
ACGGGCCACCCGCACCGATGCGGCGGCGGCCTTTGATGACCTCATCGCCGCCACCGGCATGCGCCTCGATGCGCCCGACA
TGGTGGCGGCACAGATCTGGCGGGCGGTGGAGCGCGGGCGCGACAGCGCCTATCCGCCCGGCATGGAACGCCTGTTCGTG
CTCATCCAGCGCCTTGCCCCCCGTCTCATCGACCGGGCGCTGGCCAGAACCGCCCCTGCGACAGCCGGCGCGGCGCGCGC
GGCCGCCTGA

Upstream 100 bases:

>100_bases
GATCCTGCCGCGCAGCAGATCATCATCGACCATGCCCGGCTGTTCTACCGGCTCTATGGCGACATCTTCCGCGAGCTCGG
CGCCGGCCTGGAGCTGAGCC

Downstream 100 bases:

>100_bases
GCCCACGCGGCACTTGAGCGAAGCCCTCTCGGCGCCGGTCGAAGACCGGGGCCGTCGGCGTGAATGCCCCCATCATCGAA
AGGAAACCTTATGCGTGCCA

Product: short-chain dehydrogenase/reductase SDR

Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRRDAQHGPRRVLITGAGSGIGRALALEAAARGMEVALCGRRRGALEDTAAALPPGARPLVISADITSTADRARIVARIK
AEWGALHVLVNNAGVVEGGPLETFDDAALEDTFRTNVLAPMALTRDLAPLLAAARPSRVVNVGSVFGDIAYPGFAAYSAS
KFALRGFSSALRREWRPLGIGVTYVAPRATRTDAAAAFDDLIAATGMRLDAPDMVAAQIWRAVERGRDSAYPPGMERLFV
LIQRLAPRLIDRALARTAPATAGAARAAA

Sequences:

>Translated_269_residues
MRRDAQHGPRRVLITGAGSGIGRALALEAAARGMEVALCGRRRGALEDTAAALPPGARPLVISADITSTADRARIVARIK
AEWGALHVLVNNAGVVEGGPLETFDDAALEDTFRTNVLAPMALTRDLAPLLAAARPSRVVNVGSVFGDIAYPGFAAYSAS
KFALRGFSSALRREWRPLGIGVTYVAPRATRTDAAAAFDDLIAATGMRLDAPDMVAAQIWRAVERGRDSAYPPGMERLFV
LIQRLAPRLIDRALARTAPATAGAARAAA
>Mature_269_residues
MRRDAQHGPRRVLITGAGSGIGRALALEAAARGMEVALCGRRRGALEDTAAALPPGARPLVISADITSTADRARIVARIK
AEWGALHVLVNNAGVVEGGPLETFDDAALEDTFRTNVLAPMALTRDLAPLLAAARPSRVVNVGSVFGDIAYPGFAAYSAS
KFALRGFSSALRREWRPLGIGVTYVAPRATRTDAAAAFDDLIAATGMRLDAPDMVAAQIWRAVERGRDSAYPPGMERLFV
LIQRLAPRLIDRALARTAPATAGAARAAA

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=246, Percent_Identity=31.7073170731707, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI142976729, Length=185, Percent_Identity=36.2162162162162, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI4503817, Length=230, Percent_Identity=28.695652173913, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI210032110, Length=173, Percent_Identity=34.1040462427746, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI40807363, Length=245, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI32455239, Length=170, Percent_Identity=33.5294117647059, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI5031765, Length=170, Percent_Identity=33.5294117647059, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=33.1578947368421, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7706318, Length=186, Percent_Identity=32.7956989247312, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI150247226, Length=188, Percent_Identity=32.9787234042553, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI310128830, Length=254, Percent_Identity=25.9842519685039, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI310115468, Length=254, Percent_Identity=25.9842519685039, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI25282469, Length=210, Percent_Identity=30, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI19743808, Length=189, Percent_Identity=31.7460317460317, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI22507405, Length=188, Percent_Identity=32.4468085106383, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI119392083, Length=200, Percent_Identity=33.5, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI40548397, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI214010158, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI214010156, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI22758144, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI44680136, Length=232, Percent_Identity=28.0172413793103, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI44680133, Length=232, Percent_Identity=28.0172413793103, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI17738292, Length=232, Percent_Identity=28.0172413793103, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=28.494623655914, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI109715829, Length=200, Percent_Identity=27, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI40254992, Length=181, Percent_Identity=32.5966850828729, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI50726952, Length=204, Percent_Identity=37.2549019607843, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI225579078, Length=200, Percent_Identity=31.5, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=33.5106382978723, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=37.2972972972973, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=30.1675977653631, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082100, Length=204, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367365, Length=187, Percent_Identity=33.6898395721925, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787526, Length=188, Percent_Identity=31.3829787234043, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=186, Percent_Identity=27.9569892473118, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193203115, Length=252, Percent_Identity=27.3809523809524, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=27.5720164609054, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=188, Percent_Identity=32.4468085106383, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32563809, Length=193, Percent_Identity=32.1243523316062, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=185, Percent_Identity=30.8108108108108, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=261, Percent_Identity=29.8850574712644, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=30.1075268817204, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=181, Percent_Identity=30.939226519337, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=29.8969072164948, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=250, Percent_Identity=30.8, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=241, Percent_Identity=25.7261410788382, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=251, Percent_Identity=28.6852589641434, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=185, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=147, Percent_Identity=32.6530612244898, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=189, Percent_Identity=30.6878306878307, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=185, Percent_Identity=31.3513513513514, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=189, Percent_Identity=30.6878306878307, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=185, Percent_Identity=27.5675675675676, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=186, Percent_Identity=29.5698924731183, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=186, Percent_Identity=29.5698924731183, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=187, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=248, Percent_Identity=27.4193548387097, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=189, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=189, Percent_Identity=32.2751322751323, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=35.5670103092784, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=29.0816326530612, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=29.1005291005291, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=36.0215053763441, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=36.5079365079365, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=34.4086021505376, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=35.8695652173913, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21358495, Length=280, Percent_Identity=28.9285714285714, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24640492, Length=255, Percent_Identity=24.7058823529412, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356301, Length=230, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355631, Length=248, Percent_Identity=25.8064516129032, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=188, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648944, Length=240, Percent_Identity=25, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21355319, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24651139, Length=220, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643142, Length=187, Percent_Identity=31.5508021390374, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221510726, Length=186, Percent_Identity=29.5698924731183, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649181, Length=244, Percent_Identity=26.6393442622951, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584752, Length=186, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007236, Length=193, Percent_Identity=25.9067357512953, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581726, Length=242, Percent_Identity=25.6198347107438, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=26.1111111111111, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100 [C]

Molecular weight: Translated: 28315; Mature: 28315

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRDAQHGPRRVLITGAGSGIGRALALEAAARGMEVALCGRRRGALEDTAAALPPGARPL
CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCE
VISADITSTADRARIVARIKAEWGALHVLVNNAGVVEGGPLETFDDAALEDTFRTNVLAP
EEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
MALTRDLAPLLAAARPSRVVNVGSVFGDIAYPGFAAYSASKFALRGFSSALRREWRPLGI
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCC
GVTYVAPRATRTDAAAAFDDLIAATGMRLDAPDMVAAQIWRAVERGRDSAYPPGMERLFV
EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LIQRLAPRLIDRALARTAPATAGAARAAA
HHHHHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MRRDAQHGPRRVLITGAGSGIGRALALEAAARGMEVALCGRRRGALEDTAAALPPGARPL
CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCE
VISADITSTADRARIVARIKAEWGALHVLVNNAGVVEGGPLETFDDAALEDTFRTNVLAP
EEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
MALTRDLAPLLAAARPSRVVNVGSVFGDIAYPGFAAYSASKFALRGFSSALRREWRPLGI
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCC
GVTYVAPRATRTDAAAAFDDLIAATGMRLDAPDMVAAQIWRAVERGRDSAYPPGMERLFV
EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LIQRLAPRLIDRALARTAPATAGAARAAA
HHHHHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NADPH [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]

Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]