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The map label for this gene is ycaC [H]

Identifier: 154245225

GI number: 154245225

Start: 1470707

End: 1471360

Strand: Reverse

Name: ycaC [H]

Synonym: Xaut_1277

Alternate gene names: 154245225

Gene position: 1471360-1470707 (Counterclockwise)

Preceding gene: 154245227

Following gene: 154245224

Centisome position: 27.71

GC content: 65.29

Gene sequence:

>654_bases
GTGTCAAATGCCGTCGCTGCCCCCGGCGGGATGTTGTTGTCTCCCAACGACCACACCCTGATCATGATCGACTTCCAGTC
GCAGATGTCGTTCGCGACCAAGTCCATCGACGCCGTGAACCTGCGCAACAACGCCGCCCTCGTCGCCCATGCGGCGGCCG
GGTTCGGCGTCTCCACCATCCTCACCACGGTGGCGGAGAAGAGCTTCTCCGGCCCCATGTTCTCCGAGATCACCGAGGCC
TTCCCCGGCGAGAAGCTGCTCGACCGCACCTCCATGAACACCTGGGAGGATGAGGCCGTCATCGCCAGGGTCAATGCCAT
CGGCAAGAACCGCATCGTGCTGTCGGGCCTGTGGACCGGCGTGTGCATCGTCGGCCCGGCGCTGTCGGCCATCGAGCAGG
GCTTCGAGGTCTATGTCATCGCCGACGCCTGCGGCGATGTCTCCGACGAGGCCCACGAGCGTGCCATGCAGCGCATGATC
CAGGCCGGCGCCCGGCCCATGACCTCGCTGCAATACCTGCTGGAACTGCAGCGCGACTGGGCCCGCACCGGCACCTACGA
CATGACCACTGGCATCGCCAAGAAATTCGGCGGCGCTTACGGCCTCGGCATCATCTACGCCAAGACCATGTTCGGCGCCT
CGGAAGGCCACTGA

Upstream 100 bases:

>100_bases
AAACCAGTATCTCGCAGGTAACTAATGGCCGCCGCGCCCATGTGGCGCTAGCTTCCCGTCCACCTTGTCAGTCCCCTCCA
TCACAGCAGGAGATTTCCCC

Downstream 100 bases:

>100_bases
GCATGGACCACGCCTCATCGGCCCCCAGCGCCCCGGCCGGCGGCCTGACGCGTCGCACCGCCCTTGAGCTTGGCGCCGGC
GCGGCGCTGGCCGCCGCCCT

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSNAVAAPGGMLLSPNDHTLIMIDFQSQMSFATKSIDAVNLRNNAALVAHAAAGFGVSTILTTVAEKSFSGPMFSEITEA
FPGEKLLDRTSMNTWEDEAVIARVNAIGKNRIVLSGLWTGVCIVGPALSAIEQGFEVYVIADACGDVSDEAHERAMQRMI
QAGARPMTSLQYLLELQRDWARTGTYDMTTGIAKKFGGAYGLGIIYAKTMFGASEGH

Sequences:

>Translated_217_residues
MSNAVAAPGGMLLSPNDHTLIMIDFQSQMSFATKSIDAVNLRNNAALVAHAAAGFGVSTILTTVAEKSFSGPMFSEITEA
FPGEKLLDRTSMNTWEDEAVIARVNAIGKNRIVLSGLWTGVCIVGPALSAIEQGFEVYVIADACGDVSDEAHERAMQRMI
QAGARPMTSLQYLLELQRDWARTGTYDMTTGIAKKFGGAYGLGIIYAKTMFGASEGH
>Mature_216_residues
SNAVAAPGGMLLSPNDHTLIMIDFQSQMSFATKSIDAVNLRNNAALVAHAAAGFGVSTILTTVAEKSFSGPMFSEITEAF
PGEKLLDRTSMNTWEDEAVIARVNAIGKNRIVLSGLWTGVCIVGPALSAIEQGFEVYVIADACGDVSDEAHERAMQRMIQ
AGARPMTSLQYLLELQRDWARTGTYDMTTGIAKKFGGAYGLGIIYAKTMFGASEGH

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=169, Percent_Identity=35.5029585798817, Blast_Score=118, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 23190; Mature: 23059

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAVAAPGGMLLSPNDHTLIMIDFQSQMSFATKSIDAVNLRNNAALVAHAAAGFGVSTI
CCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHCCCEEEECCCCEEEEEHHHCCCHHHH
LTTVAEKSFSGPMFSEITEAFPGEKLLDRTSMNTWEDEAVIARVNAIGKNRIVLSGLWTG
HHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHH
VCIVGPALSAIEQGFEVYVIADACGDVSDEAHERAMQRMIQAGARPMTSLQYLLELQRDW
HHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ARTGTYDMTTGIAKKFGGAYGLGIIYAKTMFGASEGH
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SNAVAAPGGMLLSPNDHTLIMIDFQSQMSFATKSIDAVNLRNNAALVAHAAAGFGVSTI
CCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHCCCEEEECCCCEEEEEHHHCCCHHHH
LTTVAEKSFSGPMFSEITEAFPGEKLLDRTSMNTWEDEAVIARVNAIGKNRIVLSGLWTG
HHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHH
VCIVGPALSAIEQGFEVYVIADACGDVSDEAHERAMQRMIQAGARPMTSLQYLLELQRDW
HHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ARTGTYDMTTGIAKKFGGAYGLGIIYAKTMFGASEGH
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]