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The map label for this gene is ydhC [H]

Identifier: 154245192

GI number: 154245192

Start: 1432513

End: 1433202

Strand: Reverse

Name: ydhC [H]

Synonym: Xaut_1244

Alternate gene names: 154245192

Gene position: 1433202-1432513 (Counterclockwise)

Preceding gene: 154245197

Following gene: 154245190

Centisome position: 27.0

GC content: 63.91

Gene sequence:

>690_bases
ATGACGTACCAGGATATCAACGTGAAGCCGATCGAGACCGAATCGAGCTTCCGGATGAAGGCGTACAAGGCGCTGAAGGC
GGCCATCATGGAGATGGACATCTACAGCCACCCCGAGGAGATCCGCCTCGAGGAACGCCAGCTCTCGGAACGACTCGGCG
TCTCGCGCACGCCCATTCGCGAGGCCATGACCCTGCTGGAGCAGGAAGGCTTCGTGCGATCCGTGCCACGCCGCGGCATC
TTCGTGGTCCGCAAGACCAAGCAGGAGGTGATCGAGATGATCACCGTCTGGGCGGCGCTGGAGAGCATGGCCGCGCGCCT
TGCCTGCGAGCGGGCGACCGAGGCGGAGATCCGCCTGCTGCGCGAGAATGTGCGCGCCTTCGCCAACCGCGATCCGGAGG
ACTACGTCTCGGAATATTCCGAGGCGAACCTCGCCTTCCACAAGCTCATCATCCGCATGTCCGGATGCCAGCTCATCGCC
GAGACCACAGAAAACCTGTTTCCGCACATGCGCGGGGTGCGCAAGGTCACCATCGGCCAGGACCACCGCGCCCAGCGCTC
CATCGTGGACCACACCAAGATCGTGGAAGCCATCGAGAAGCGCGACCCGGACCTCGCCGAGCGCCTGGTGCGCGAGCACA
CCATGGGTCTTGCCCGCCATGTGGCAGAGCACGGTAATTTCCTGGACTGA

Upstream 100 bases:

>100_bases
CAATCATGCTGCCATTAGATATGATGTATATGGTGGGCAAAGGCGGGAATCACGCGGCGCCGATCCGGCGAACCTGATCA
GCCAGGGGCGAAAGGGTGCG

Downstream 100 bases:

>100_bases
GCGCCCGGCGACGCGCGCAACAAAAAAGGCCGGCGCATGCGCCGGCCTTTTTCTTGTCTCAGAGGCTCTCAGGCCGCCTT
GTGCTTGCCGATCATCTCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHPEEIRLEERQLSERLGVSRTPIREAMTLLEQEGFVRSVPRRGI
FVVRKTKQEVIEMITVWAALESMAARLACERATEAEIRLLRENVRAFANRDPEDYVSEYSEANLAFHKLIIRMSGCQLIA
ETTENLFPHMRGVRKVTIGQDHRAQRSIVDHTKIVEAIEKRDPDLAERLVREHTMGLARHVAEHGNFLD

Sequences:

>Translated_229_residues
MTYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHPEEIRLEERQLSERLGVSRTPIREAMTLLEQEGFVRSVPRRGI
FVVRKTKQEVIEMITVWAALESMAARLACERATEAEIRLLRENVRAFANRDPEDYVSEYSEANLAFHKLIIRMSGCQLIA
ETTENLFPHMRGVRKVTIGQDHRAQRSIVDHTKIVEAIEKRDPDLAERLVREHTMGLARHVAEHGNFLD
>Mature_228_residues
TYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHPEEIRLEERQLSERLGVSRTPIREAMTLLEQEGFVRSVPRRGIF
VVRKTKQEVIEMITVWAALESMAARLACERATEAEIRLLRENVRAFANRDPEDYVSEYSEANLAFHKLIIRMSGCQLIAE
TTENLFPHMRGVRKVTIGQDHRAQRSIVDHTKIVEAIEKRDPDLAERLVREHTMGLARHVAEHGNFLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=179, Percent_Identity=28.4916201117318, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26503; Mature: 26372

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHPEEIRLEERQLSERLGVSRTPIR
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH
EAMTLLEQEGFVRSVPRRGIFVVRKTKQEVIEMITVWAALESMAARLACERATEAEIRLL
HHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RENVRAFANRDPEDYVSEYSEANLAFHKLIIRMSGCQLIAETTENLFPHMRGVRKVTIGQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEECCC
DHRAQRSIVDHTKIVEAIEKRDPDLAERLVREHTMGLARHVAEHGNFLD
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TYQDINVKPIETESSFRMKAYKALKAAIMEMDIYSHPEEIRLEERQLSERLGVSRTPIR
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH
EAMTLLEQEGFVRSVPRRGIFVVRKTKQEVIEMITVWAALESMAARLACERATEAEIRLL
HHHHHHHHCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RENVRAFANRDPEDYVSEYSEANLAFHKLIIRMSGCQLIAETTENLFPHMRGVRKVTIGQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEECCC
DHRAQRSIVDHTKIVEAIEKRDPDLAERLVREHTMGLARHVAEHGNFLD
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]